ZN251.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN251.H12INVIVO.0.P.C
Gene (human)	ZNF251 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	19
Consensus	TYKCRCTYARCRYhnTdbY
GC content	43.87%
Information content (bits; total / per base)	16.539 / 0.87
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (3)	0.906	0.916	0.889	0.903	0.899	0.909	8.25	8.538	461.721	575.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.52
HGNC	HGNC:13045
MGI
EntrezGene (human)	GeneID:90987 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN251_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BRH9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN251.H12INVIVO.0.P.C.pcm
PWM	ZN251.H12INVIVO.0.P.C.pwm
PFM	ZN251.H12INVIVO.0.P.C.pfm
Alignment	ZN251.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN251.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN251.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN251.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN251.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN251.H12INVIVO.0.P.C_homer_format_0.001.txt ZN251.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN251.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	77.25	51.25	54.25	817.25
02	61.25	81.25	73.25	784.25
03	23.25	56.25	240.25	680.25
04	11.25	937.25	17.25	34.25
05	800.25	54.25	96.25	49.25
06	10.25	819.25	99.25	71.25
07	14.25	10.25	5.25	970.25
08	36.25	107.25	80.25	776.25
09	870.25	10.25	94.25	25.25
10	286.25	22.25	678.25	13.25
11	9.25	958.25	14.25	18.25
12	556.0	39.0	353.0	52.0
13	56.0	609.0	41.0	294.0
14	428.0	275.0	139.0	158.0
15	302.0	186.0	341.0	171.0
16	89.0	58.0	44.0	809.0
17	195.0	136.0	449.0	220.0
18	79.0	183.0	158.0	580.0
19	77.0	697.0	67.0	159.0

PFM

	A	C	G	T
01	0.077	0.051	0.054	0.817
02	0.061	0.081	0.073	0.784
03	0.023	0.056	0.24	0.68
04	0.011	0.937	0.017	0.034
05	0.8	0.054	0.096	0.049
06	0.01	0.819	0.099	0.071
07	0.014	0.01	0.005	0.97
08	0.036	0.107	0.08	0.776
09	0.87	0.01	0.094	0.025
10	0.286	0.022	0.678	0.013
11	0.009	0.958	0.014	0.018
12	0.556	0.039	0.353	0.052
13	0.056	0.609	0.041	0.294
14	0.428	0.275	0.139	0.158
15	0.302	0.186	0.341	0.171
16	0.089	0.058	0.044	0.809
17	0.195	0.136	0.449	0.22
18	0.079	0.183	0.158	0.58
19	0.077	0.697	0.067	0.159

PWM

	A	C	G	T
01	-1.159	-1.558	-1.503	1.18
02	-1.386	-1.11	-1.211	1.139
03	-2.31	-1.468	-0.04	0.997
04	-2.965	1.316	-2.585	-1.945
05	1.159	-1.503	-0.944	-1.597
06	-3.045	1.182	-0.913	-1.238
07	-2.757	-3.045	-3.586	1.351
08	-1.891	-0.837	-1.122	1.128
09	1.242	-3.045	-0.964	-2.233
10	0.135	-2.351	0.994	-2.822
11	-3.133	1.339	-2.757	-2.534
12	0.796	-1.821	0.343	-1.544
13	-1.473	0.886	-1.774	0.161
14	0.535	0.095	-0.582	-0.455
15	0.188	-0.293	0.309	-0.377
16	-1.02	-1.439	-1.706	1.17
17	-0.247	-0.603	0.583	-0.127
18	-1.137	-0.309	-0.455	0.838
19	-1.162	1.021	-1.298	-0.449

Standard thresholds

P-value	Threshold
0.001	2.73641
0.0005	3.85996
0.0001	6.24196