| Motif | ZN250.H12RSNP.1.M.D |
| Gene (human) | ZNF250 (GeneCards) |
| Gene synonyms (human) | ZNF647 |
| Gene (mouse) | Znf250 |
| Gene synonyms (mouse) | Zfp647, Znf647 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ZN250.H12RSNP.1.M.D |
| Gene (human) | ZNF250 (GeneCards) |
| Gene synonyms (human) | ZNF647 |
| Gene (mouse) | Znf250 |
| Gene synonyms (mouse) | Zfp647, Znf647 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | nhRRGCCTAhn |
| GC content | 53.21% |
| Information content (bits; total / per base) | 10.555 / 0.96 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 9845 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (5) | 0.468 | 0.472 | 0.314 | 0.316 | 0.41 | 0.418 | 0.753 | 0.8 | 6.824 | 9.046 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Methyl HT-SELEX, 1 experiments | median | 0.945 | 0.931 | 0.806 | 0.801 | 0.665 | 0.687 |
| best | 0.945 | 0.931 | 0.806 | 0.801 | 0.665 | 0.687 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.160 |
| HGNC | HGNC:13044 |
| MGI | MGI:3052806 |
| EntrezGene (human) | GeneID:58500 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:239546 (SSTAR profile) |
| UniProt ID (human) | ZN250_HUMAN |
| UniProt ID (mouse) | ZN250_MOUSE |
| UniProt AC (human) | P15622 (TFClass) |
| UniProt AC (mouse) | Q7TNU6 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 1 |
| PCM | ZN250.H12RSNP.1.M.D.pcm |
| PWM | ZN250.H12RSNP.1.M.D.pwm |
| PFM | ZN250.H12RSNP.1.M.D.pfm |
| Alignment | ZN250.H12RSNP.1.M.D.words.tsv |
| Threshold to P-value map | ZN250.H12RSNP.1.M.D.thr |
| Motif in other formats | |
| JASPAR format | ZN250.H12RSNP.1.M.D_jaspar_format.txt |
| MEME format | ZN250.H12RSNP.1.M.D_meme_format.meme |
| Transfac format | ZN250.H12RSNP.1.M.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2443.25 | 2437.25 | 1954.25 | 3010.25 |
| 02 | 1961.25 | 2290.25 | 1371.25 | 4222.25 |
| 03 | 6065.0 | 965.0 | 2050.0 | 765.0 |
| 04 | 1905.0 | 412.0 | 6636.0 | 892.0 |
| 05 | 102.0 | 38.0 | 9666.0 | 39.0 |
| 06 | 1.0 | 9844.0 | 0.0 | 0.0 |
| 07 | 6.0 | 9801.0 | 38.0 | 0.0 |
| 08 | 4.0 | 270.0 | 1.0 | 9570.0 |
| 09 | 9051.0 | 435.0 | 126.0 | 233.0 |
| 10 | 1757.5 | 3261.5 | 946.5 | 3879.5 |
| 11 | 1981.25 | 2580.25 | 2501.25 | 2782.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.248 | 0.248 | 0.199 | 0.306 |
| 02 | 0.199 | 0.233 | 0.139 | 0.429 |
| 03 | 0.616 | 0.098 | 0.208 | 0.078 |
| 04 | 0.193 | 0.042 | 0.674 | 0.091 |
| 05 | 0.01 | 0.004 | 0.982 | 0.004 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 |
| 07 | 0.001 | 0.996 | 0.004 | 0.0 |
| 08 | 0.0 | 0.027 | 0.0 | 0.972 |
| 09 | 0.919 | 0.044 | 0.013 | 0.024 |
| 10 | 0.179 | 0.331 | 0.096 | 0.394 |
| 11 | 0.201 | 0.262 | 0.254 | 0.283 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.007 | -0.01 | -0.23 | 0.201 |
| 02 | -0.227 | -0.072 | -0.584 | 0.539 |
| 03 | 0.901 | -0.935 | -0.183 | -1.166 |
| 04 | -0.256 | -1.783 | 0.991 | -1.013 |
| 05 | -3.162 | -4.113 | 1.367 | -4.089 |
| 06 | -6.616 | 1.385 | -6.977 | -6.977 |
| 07 | -5.693 | 1.381 | -4.113 | -6.977 |
| 08 | -5.969 | -2.202 | -6.616 | 1.357 |
| 09 | 1.302 | -1.729 | -2.955 | -2.349 |
| 10 | -0.336 | 0.281 | -0.954 | 0.455 |
| 11 | -0.217 | 0.047 | 0.016 | 0.122 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.540715 |
| 0.0005 | 5.729365 |
| 0.0001 | 7.65584 |