ZN250.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN250.H12INVIVO.0.P.C
Gene (human)	ZNF250 (GeneCards)
Gene synonyms (human)	ZNF647
Gene (mouse)	Znf250
Gene synonyms (mouse)	Zfp647, Znf647
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	CARTRCCATRCTGTTTTGRTTAC
GC content	40.85%
Information content (bits; total / per base)	28.757 / 1.25
Data sources	ChIP-Seq
Aligned words	867

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.88	0.889	0.883	0.892	0.89	0.903	13.475	13.932	415.959	442.119

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.536	0.521	0.53	0.518	0.523	0.514
Methyl HT-SELEX, 1 experiments	best	0.536	0.521	0.53	0.518	0.523	0.514

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.160
HGNC	HGNC:13044
MGI	MGI:3052806
EntrezGene (human)	GeneID:58500 (SSTAR profile)
EntrezGene (mouse)	GeneID:239546 (SSTAR profile)
UniProt ID (human)	ZN250_HUMAN
UniProt ID (mouse)	ZN250_MOUSE
UniProt AC (human)	P15622 (TFClass)
UniProt AC (mouse)	Q7TNU6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZN250.H12INVIVO.0.P.C.pcm
PWM	ZN250.H12INVIVO.0.P.C.pwm
PFM	ZN250.H12INVIVO.0.P.C.pfm
Alignment	ZN250.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN250.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN250.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN250.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN250.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN250.H12INVIVO.0.P.C_homer_format_0.001.txt ZN250.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN250.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	45.0	713.0	27.0	82.0
02	736.0	33.0	61.0	37.0
03	173.0	36.0	614.0	44.0
04	20.0	55.0	41.0	751.0
05	628.0	15.0	161.0	63.0
06	14.0	803.0	13.0	37.0
07	11.0	830.0	4.0	22.0
08	791.0	18.0	25.0	33.0
09	9.0	171.0	10.0	677.0
10	326.0	17.0	472.0	52.0
11	7.0	801.0	9.0	50.0
12	33.0	34.0	31.0	769.0
13	58.0	15.0	787.0	7.0
14	9.0	33.0	8.0	817.0
15	9.0	23.0	41.0	794.0
16	35.0	40.0	5.0	787.0
17	11.0	13.0	51.0	792.0
18	69.0	16.0	763.0	19.0
19	420.0	22.0	364.0	61.0
20	11.0	22.0	21.0	813.0
21	35.0	38.0	62.0	732.0
22	756.0	56.0	30.0	25.0
23	19.0	721.0	20.0	107.0

PFM

	A	C	G	T
01	0.052	0.822	0.031	0.095
02	0.849	0.038	0.07	0.043
03	0.2	0.042	0.708	0.051
04	0.023	0.063	0.047	0.866
05	0.724	0.017	0.186	0.073
06	0.016	0.926	0.015	0.043
07	0.013	0.957	0.005	0.025
08	0.912	0.021	0.029	0.038
09	0.01	0.197	0.012	0.781
10	0.376	0.02	0.544	0.06
11	0.008	0.924	0.01	0.058
12	0.038	0.039	0.036	0.887
13	0.067	0.017	0.908	0.008
14	0.01	0.038	0.009	0.942
15	0.01	0.027	0.047	0.916
16	0.04	0.046	0.006	0.908
17	0.013	0.015	0.059	0.913
18	0.08	0.018	0.88	0.022
19	0.484	0.025	0.42	0.07
20	0.013	0.025	0.024	0.938
21	0.04	0.044	0.072	0.844
22	0.872	0.065	0.035	0.029
23	0.022	0.832	0.023	0.123

PWM

	A	C	G	T
01	-1.543	1.185	-2.03	-0.959
02	1.217	-1.84	-1.248	-1.731
03	-0.223	-1.757	1.036	-1.565
04	-2.31	-1.349	-1.633	1.237
05	1.059	-2.572	-0.295	-1.217
06	-2.633	1.304	-2.699	-1.731
07	-2.846	1.337	-3.648	-2.221
08	1.289	-2.406	-2.102	-1.84
09	-3.017	-0.235	-2.928	1.134
10	0.406	-2.458	0.774	-1.403
11	-3.224	1.301	-3.017	-1.441
12	-1.84	-1.812	-1.899	1.261
13	-1.297	-2.572	1.284	-3.224
14	-3.017	-1.84	-3.115	1.321
15	-3.017	-2.18	-1.633	1.293
16	-1.784	-1.656	-3.486	1.284
17	-2.846	-2.699	-1.422	1.29
18	-1.128	-2.513	1.253	-2.357
19	0.658	-2.221	0.515	-1.248
20	-2.846	-2.221	-2.265	1.316
21	-1.784	-1.705	-1.232	1.212
22	1.244	-1.331	-1.93	-2.102
23	-2.357	1.196	-2.31	-0.698

Standard thresholds

P-value	Threshold
0.001	-3.23379
0.0005	-1.68639
0.0001	1.64281