MotifZN250.H12INVITRO.1.M.C
Gene (human)ZNF250
(GeneCards)
Gene synonyms (human)ZNF647
Gene (mouse)Znf250
Gene synonyms (mouse)Zfp647, Znf647
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length11
ConsensusnhRRGCCTAhn
GC content53.21%
Information content (bits; total / per base)10.555 / 0.96
Data sourcesMethyl-HT-SELEX
Aligned words9845

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.468 0.472 0.314 0.316 0.41 0.418 0.753 0.8 6.824 9.046

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Methyl HT-SELEX, 1 experiments median 0.945 0.931 0.806 0.801 0.665 0.687
best 0.945 0.931 0.806 0.801 0.665 0.687
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.160
HGNCHGNC:13044
MGIMGI:3052806
EntrezGene (human)GeneID:58500
(SSTAR profile)
EntrezGene (mouse)GeneID:239546
(SSTAR profile)
UniProt ID (human)ZN250_HUMAN
UniProt ID (mouse)ZN250_MOUSE
UniProt AC (human)P15622
(TFClass)
UniProt AC (mouse)Q7TNU6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 1
PCM
ACGT
012443.252437.251954.253010.25
021961.252290.251371.254222.25
036065.0965.02050.0765.0
041905.0412.06636.0892.0
05102.038.09666.039.0
061.09844.00.00.0
076.09801.038.00.0
084.0270.01.09570.0
099051.0435.0126.0233.0
101757.53261.5946.53879.5
111981.252580.252501.252782.25
PFM
ACGT
010.2480.2480.1990.306
020.1990.2330.1390.429
030.6160.0980.2080.078
040.1930.0420.6740.091
050.010.0040.9820.004
060.01.00.00.0
070.0010.9960.0040.0
080.00.0270.00.972
090.9190.0440.0130.024
100.1790.3310.0960.394
110.2010.2620.2540.283
PWM
ACGT
01-0.007-0.01-0.230.201
02-0.227-0.072-0.5840.539
030.901-0.935-0.183-1.166
04-0.256-1.7830.991-1.013
05-3.162-4.1131.367-4.089
06-6.6161.385-6.977-6.977
07-5.6931.381-4.113-6.977
08-5.969-2.202-6.6161.357
091.302-1.729-2.955-2.349
10-0.3360.281-0.9540.455
11-0.2170.0470.0160.122
Standard thresholds
P-value Threshold
0.001 4.540715
0.0005 5.729365
0.0001 7.65584