MotifZN248.H12INVIVO.0.P.B
Gene (human)ZNF248
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length23
ConsensusATMCCATGTTCATGGATdGGWAR
GC content39.98%
Information content (bits; total / per base)34.639 / 1.506
Data sourcesChIP-Seq
Aligned words149

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (10) 0.731 0.882 0.72 0.887 0.608 0.973 8.522 14.546 158.654 746.585
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyZNF37A-like {2.3.4.25} (TFClass)
TFClass IDTFClass: 2.3.4.25.3
HGNCHGNC:13041
MGI
EntrezGene (human)GeneID:57209
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN248_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8NDW4
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01147.01.01.00.0
020.00.010.0139.0
0374.056.00.019.0
041.0148.00.00.0
056.0129.00.014.0
06149.00.00.00.0
070.02.01.0146.0
088.01.0139.01.0
090.09.00.0140.0
100.01.00.0148.0
111.0148.00.00.0
12149.00.00.00.0
130.00.00.0149.0
141.00.0147.01.0
155.00.0144.00.0
16148.00.00.01.0
176.010.03.0130.0
1844.013.019.073.0
1923.04.0120.02.0
2023.04.0119.03.0
21113.04.012.020.0
22129.04.06.010.0
2319.04.0111.015.0
PFM
ACGT
010.9870.0070.0070.0
020.00.00.0670.933
030.4970.3760.00.128
040.0070.9930.00.0
050.040.8660.00.094
061.00.00.00.0
070.00.0130.0070.98
080.0540.0070.9330.007
090.00.060.00.94
100.00.0070.00.993
110.0070.9930.00.0
121.00.00.00.0
130.00.00.01.0
140.0070.00.9870.007
150.0340.00.9660.0
160.9930.00.00.007
170.040.0670.020.872
180.2950.0870.1280.49
190.1540.0270.8050.013
200.1540.0270.7990.02
210.7580.0270.0810.134
220.8660.0270.040.067
230.1280.0270.7450.101
PWM
ACGT
011.348-2.839-2.839-3.427
02-3.427-3.427-1.231.293
030.670.397-3.427-0.642
04-2.8391.355-3.427-3.427
05-1.671.219-3.427-0.926
061.362-3.427-3.427-3.427
07-3.427-2.472-2.8391.341
08-1.426-2.8391.293-2.839
09-3.427-1.323-3.4271.3
10-3.427-2.839-3.4271.355
11-2.8391.355-3.427-3.427
121.362-3.427-3.427-3.427
13-3.427-3.427-3.4271.362
14-2.839-3.4271.348-2.839
15-1.818-3.4271.328-3.427
161.355-3.427-3.427-2.839
17-1.67-1.23-2.2041.226
180.162-0.994-0.6420.657
19-0.462-1.9921.147-2.472
20-0.462-1.9921.139-2.204
211.088-1.992-1.067-0.594
221.219-1.992-1.67-1.23
23-0.642-1.9921.07-0.863
Standard thresholds
P-value Threshold
0.001 -7.18384
0.0005 -5.36799
0.0001 -1.45984