ZN248.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN248.H12INVIVO.0.P.B
Gene (human)	ZNF248 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	ATMCCATGTTCATGGATdGGWAR
GC content	39.98%
Information content (bits; total / per base)	34.639 / 1.506
Data sources	ChIP-Seq
Aligned words	149

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.731	0.882	0.72	0.887	0.608	0.973	8.522	14.546	158.654	746.585

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.3
HGNC	HGNC:13041
MGI
EntrezGene (human)	GeneID:57209 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN248_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NDW4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN248.H12INVIVO.0.P.B.pcm
PWM	ZN248.H12INVIVO.0.P.B.pwm
PFM	ZN248.H12INVIVO.0.P.B.pfm
Alignment	ZN248.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN248.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN248.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN248.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN248.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN248.H12INVIVO.0.P.B_homer_format_0.001.txt ZN248.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN248.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	147.0	1.0	1.0	0.0
02	0.0	0.0	10.0	139.0
03	74.0	56.0	0.0	19.0
04	1.0	148.0	0.0	0.0
05	6.0	129.0	0.0	14.0
06	149.0	0.0	0.0	0.0
07	0.0	2.0	1.0	146.0
08	8.0	1.0	139.0	1.0
09	0.0	9.0	0.0	140.0
10	0.0	1.0	0.0	148.0
11	1.0	148.0	0.0	0.0
12	149.0	0.0	0.0	0.0
13	0.0	0.0	0.0	149.0
14	1.0	0.0	147.0	1.0
15	5.0	0.0	144.0	0.0
16	148.0	0.0	0.0	1.0
17	6.0	10.0	3.0	130.0
18	44.0	13.0	19.0	73.0
19	23.0	4.0	120.0	2.0
20	23.0	4.0	119.0	3.0
21	113.0	4.0	12.0	20.0
22	129.0	4.0	6.0	10.0
23	19.0	4.0	111.0	15.0

PFM

	A	C	G	T
01	0.987	0.007	0.007	0.0
02	0.0	0.0	0.067	0.933
03	0.497	0.376	0.0	0.128
04	0.007	0.993	0.0	0.0
05	0.04	0.866	0.0	0.094
06	1.0	0.0	0.0	0.0
07	0.0	0.013	0.007	0.98
08	0.054	0.007	0.933	0.007
09	0.0	0.06	0.0	0.94
10	0.0	0.007	0.0	0.993
11	0.007	0.993	0.0	0.0
12	1.0	0.0	0.0	0.0
13	0.0	0.0	0.0	1.0
14	0.007	0.0	0.987	0.007
15	0.034	0.0	0.966	0.0
16	0.993	0.0	0.0	0.007
17	0.04	0.067	0.02	0.872
18	0.295	0.087	0.128	0.49
19	0.154	0.027	0.805	0.013
20	0.154	0.027	0.799	0.02
21	0.758	0.027	0.081	0.134
22	0.866	0.027	0.04	0.067
23	0.128	0.027	0.745	0.101

PWM

	A	C	G	T
01	1.348	-2.839	-2.839	-3.427
02	-3.427	-3.427	-1.23	1.293
03	0.67	0.397	-3.427	-0.642
04	-2.839	1.355	-3.427	-3.427
05	-1.67	1.219	-3.427	-0.926
06	1.362	-3.427	-3.427	-3.427
07	-3.427	-2.472	-2.839	1.341
08	-1.426	-2.839	1.293	-2.839
09	-3.427	-1.323	-3.427	1.3
10	-3.427	-2.839	-3.427	1.355
11	-2.839	1.355	-3.427	-3.427
12	1.362	-3.427	-3.427	-3.427
13	-3.427	-3.427	-3.427	1.362
14	-2.839	-3.427	1.348	-2.839
15	-1.818	-3.427	1.328	-3.427
16	1.355	-3.427	-3.427	-2.839
17	-1.67	-1.23	-2.204	1.226
18	0.162	-0.994	-0.642	0.657
19	-0.462	-1.992	1.147	-2.472
20	-0.462	-1.992	1.139	-2.204
21	1.088	-1.992	-1.067	-0.594
22	1.219	-1.992	-1.67	-1.23
23	-0.642	-1.992	1.07	-0.863

Standard thresholds

P-value	Threshold
0.001	-7.18384
0.0005	-5.36799
0.0001	-1.45984