MotifZN239.H12INVIVO.0.P.C
Gene (human)ZNF239
(GeneCards)
Gene synonyms (human)HOK2, MOK2
Gene (mouse)Znf239
Gene synonyms (mouse)Mok-2, Mok2, Zfp239
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length28
ConsensusnhYRCMSdMMYWvTCASWSMCWYdvhhd
GC content49.49%
Information content (bits; total / per base)18.328 / 0.655
Data sourcesChIP-Seq
Aligned words400

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.836 0.88 0.803 0.858 0.848 0.895 9.907 10.283 91.569 221.0
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.83
HGNCHGNC:13031
MGIMGI:1306812
EntrezGene (human)GeneID:8187
(SSTAR profile)
EntrezGene (mouse)GeneID:22685
(SSTAR profile)
UniProt ID (human)ZN239_HUMAN
UniProt ID (mouse)ZN239_MOUSE
UniProt AC (human)Q16600
(TFClass)
UniProt AC (mouse)P24399
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01108.0145.091.056.0
0299.0183.038.080.0
0328.0136.016.0220.0
04124.024.0223.029.0
0514.0354.017.015.0
06312.036.026.026.0
0723.095.0254.028.0
08127.032.0205.036.0
09172.0206.07.015.0
1082.0282.09.027.0
1122.085.05.0288.0
1266.035.018.0281.0
13110.0194.073.023.0
1479.06.07.0308.0
156.0387.05.02.0
16367.010.02.021.0
175.087.0287.021.0
18230.021.064.085.0
1951.087.0233.029.0
2077.0288.016.019.0
2129.0335.010.026.0
2281.041.06.0272.0
237.0101.015.0277.0
2498.045.059.0198.0
25193.0111.073.023.0
26181.071.060.088.0
2764.0129.059.0148.0
28188.047.092.073.0
PFM
ACGT
010.270.3630.2270.14
020.2480.4580.0950.2
030.070.340.040.55
040.310.060.5570.073
050.0350.8850.0420.037
060.780.090.0650.065
070.0580.2380.6350.07
080.3180.080.5120.09
090.430.5150.0180.038
100.2050.7050.0230.068
110.0550.2130.0130.72
120.1650.0880.0450.702
130.2750.4850.1830.058
140.1980.0150.0180.77
150.0150.9680.0130.005
160.9180.0250.0050.052
170.0130.2180.7170.053
180.5750.0530.160.213
190.1270.2180.5820.073
200.1930.720.040.048
210.0720.8380.0250.065
220.2030.1030.0150.68
230.0180.2530.0380.692
240.2450.1130.1480.495
250.4820.2780.1830.058
260.4520.1780.150.22
270.160.3230.1480.37
280.470.1180.230.183
PWM
ACGT
010.0760.367-0.093-0.568
02-0.010.598-0.944-0.219
03-1.2360.304-1.7580.78
040.212-1.3810.794-1.202
05-1.8791.253-1.702-1.817
061.128-0.996-1.306-1.306
07-1.421-0.0510.923-1.236
080.236-1.1090.71-0.996
090.5360.715-2.48-1.817
10-0.1951.027-2.269-1.27
11-1.463-0.16-2.7491.048
12-0.408-1.023-1.651.024
130.0940.656-0.309-1.421
14-0.232-2.605-2.481.115
15-2.6051.342-2.749-3.368
161.289-2.178-3.368-1.507
17-2.749-0.1371.045-1.507
180.825-1.507-0.438-0.16
19-0.659-0.1370.837-1.202
20-0.2571.048-1.758-1.6
21-1.2021.199-2.178-1.306
22-0.207-0.871-2.6050.991
23-2.480.01-1.8171.009
24-0.02-0.781-0.5170.676
250.650.103-0.309-1.421
260.587-0.336-0.501-0.126
27-0.4380.251-0.5170.387
280.624-0.739-0.082-0.309
Standard thresholds
P-value Threshold
0.001 2.33841
0.0005 3.48591
0.0001 5.92676