ZN224.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN224.H12CORE.0.P.B
Gene (human)	ZNF224 (GeneCards)
Gene synonyms (human)	BMZF2, KOX22, ZNF233, ZNF255, ZNF27
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	RKShMWKbRRdYYvhvddbMhhY
GC content	50.44%
Information content (bits; total / per base)	11.41 / 0.496
Data sources	ChIP-Seq
Aligned words	772

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.71	0.821	0.551	0.745	0.8	0.847	3.929	4.361	101.076	148.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.6
HGNC	HGNC:13017
MGI
EntrezGene (human)	GeneID:7767 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN224_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NZL3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN224.H12CORE.0.P.B.pcm
PWM	ZN224.H12CORE.0.P.B.pwm
PFM	ZN224.H12CORE.0.P.B.pfm
Alignment	ZN224.H12CORE.0.P.B.words.tsv
Threshold to P-value map	ZN224.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	ZN224.H12CORE.0.P.B_jaspar_format.txt
MEME format	ZN224.H12CORE.0.P.B_meme_format.meme
Transfac format	ZN224.H12CORE.0.P.B_transfac_format.txt
Homer format	ZN224.H12CORE.0.P.B_homer_format_0.001.txt ZN224.H12CORE.0.P.B_homer_format_0.0005.txt ZN224.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	550.0	22.0	138.0	62.0
02	145.0	19.0	434.0	174.0
03	43.0	538.0	104.0	87.0
04	108.0	326.0	89.0	249.0
05	271.0	445.0	23.0	33.0
06	592.0	22.0	20.0	138.0
07	20.0	50.0	549.0	153.0
08	80.0	155.0	320.0	217.0
09	280.0	5.0	465.0	22.0
10	599.0	20.0	105.0	48.0
11	163.0	59.0	427.0	123.0
12	74.0	86.0	28.0	584.0
13	52.0	531.0	76.0	113.0
14	394.0	176.0	160.0	42.0
15	354.0	91.0	55.0	272.0
16	315.0	67.0	344.0	46.0
17	189.0	97.0	101.0	385.0
18	127.0	101.0	393.0	151.0
19	96.0	204.0	338.0	134.0
20	275.0	371.0	24.0	102.0
21	248.0	285.0	90.0	149.0
22	157.0	377.0	37.0	201.0
23	81.0	526.0	63.0	102.0

PFM

	A	C	G	T
01	0.712	0.028	0.179	0.08
02	0.188	0.025	0.562	0.225
03	0.056	0.697	0.135	0.113
04	0.14	0.422	0.115	0.323
05	0.351	0.576	0.03	0.043
06	0.767	0.028	0.026	0.179
07	0.026	0.065	0.711	0.198
08	0.104	0.201	0.415	0.281
09	0.363	0.006	0.602	0.028
10	0.776	0.026	0.136	0.062
11	0.211	0.076	0.553	0.159
12	0.096	0.111	0.036	0.756
13	0.067	0.688	0.098	0.146
14	0.51	0.228	0.207	0.054
15	0.459	0.118	0.071	0.352
16	0.408	0.087	0.446	0.06
17	0.245	0.126	0.131	0.499
18	0.165	0.131	0.509	0.196
19	0.124	0.264	0.438	0.174
20	0.356	0.481	0.031	0.132
21	0.321	0.369	0.117	0.193
22	0.203	0.488	0.048	0.26
23	0.105	0.681	0.082	0.132

PWM

	A	C	G	T
01	1.042	-2.107	-0.332	-1.118
02	-0.283	-2.243	0.806	-0.103
03	-1.472	1.02	-0.611	-0.786
04	-0.574	0.521	-0.764	0.253
05	0.337	0.831	-2.066	-1.726
06	1.115	-2.107	-2.196	-0.332
07	-2.196	-1.327	1.04	-0.23
08	-0.869	-0.217	0.502	0.116
09	0.369	-3.375	0.874	-2.107
10	1.127	-2.196	-0.602	-1.366
11	-0.167	-1.166	0.789	-0.446
12	-0.945	-0.798	-1.881	1.101
13	-1.289	1.007	-0.919	-0.529
14	0.709	-0.091	-0.186	-1.495
15	0.603	-0.742	-1.234	0.341
16	0.487	-1.042	0.574	-1.407
17	-0.021	-0.68	-0.64	0.686
18	-0.414	-0.64	0.707	-0.243
19	-0.69	0.055	0.557	-0.361
20	0.352	0.649	-2.026	-0.63
21	0.249	0.387	-0.753	-0.256
22	-0.204	0.665	-1.616	0.04
23	-0.857	0.997	-1.102	-0.63

Standard thresholds

P-value	Threshold
0.001	4.42611
0.0005	5.26631
0.0001	7.04101