ZN223.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN223.H12RSNP.0.P.D
Gene (human)	ZNF223 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	vdGGdGGYbCAGGYMv
GC content	66.6%
Information content (bits; total / per base)	13.991 / 0.874
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.847	0.87	0.763	0.79	0.907	0.926	4.123	4.358	173.727	231.301

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.2
HGNC	HGNC:13016
MGI
EntrezGene (human)	GeneID:7766 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN223_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UK11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN223.H12RSNP.0.P.D.pcm
PWM	ZN223.H12RSNP.0.P.D.pwm
PFM	ZN223.H12RSNP.0.P.D.pfm
Alignment	ZN223.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN223.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN223.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN223.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN223.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN223.H12RSNP.0.P.D_homer_format_0.001.txt ZN223.H12RSNP.0.P.D_homer_format_0.0005.txt ZN223.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	488.0	151.0	279.0	81.0
02	448.0	55.0	329.0	167.0
03	67.0	25.0	858.0	49.0
04	112.0	41.0	828.0	18.0
05	275.0	24.0	273.0	427.0
06	46.0	13.0	930.0	10.0
07	191.0	5.0	801.0	2.0
08	113.0	426.0	26.0	434.0
09	79.0	269.0	551.0	100.0
10	17.0	842.0	134.0	6.0
11	828.0	75.0	70.0	26.0
12	7.0	3.0	979.0	10.0
13	21.0	12.0	948.0	18.0
14	111.0	691.0	64.0	133.0
15	589.0	192.0	52.0	166.0
16	200.0	198.0	502.0	99.0

PFM

	A	C	G	T
01	0.488	0.151	0.279	0.081
02	0.448	0.055	0.329	0.167
03	0.067	0.025	0.859	0.049
04	0.112	0.041	0.829	0.018
05	0.275	0.024	0.273	0.427
06	0.046	0.013	0.931	0.01
07	0.191	0.005	0.802	0.002
08	0.113	0.426	0.026	0.434
09	0.079	0.269	0.552	0.1
10	0.017	0.843	0.134	0.006
11	0.829	0.075	0.07	0.026
12	0.007	0.003	0.98	0.01
13	0.021	0.012	0.949	0.018
14	0.111	0.692	0.064	0.133
15	0.59	0.192	0.052	0.166
16	0.2	0.198	0.503	0.099

PWM

	A	C	G	T
01	0.666	-0.499	0.11	-1.112
02	0.581	-1.489	0.274	-0.399
03	-1.297	-2.242	1.229	-1.601
04	-0.794	-1.773	1.194	-2.545
05	0.096	-2.28	0.088	0.533
06	-1.662	-2.838	1.31	-3.065
07	-0.266	-3.621	1.161	-4.212
08	-0.785	0.531	-2.205	0.55
09	-1.136	0.074	0.788	-0.905
10	-2.597	1.21	-0.617	-3.483
11	1.194	-1.187	-1.254	-2.205
12	-3.361	-3.974	1.361	-3.065
13	-2.404	-2.908	1.329	-2.545
14	-0.802	1.013	-1.342	-0.624
15	0.854	-0.261	-1.543	-0.405
16	-0.22	-0.23	0.695	-0.915

Standard thresholds

P-value	Threshold
0.001	3.53536
0.0005	4.59901
0.0001	6.81826