ZN214.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN214.H12INVITRO.0.P.D
Gene (human)	ZNF214 (GeneCards)
Gene synonyms (human)	BAZ1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RnhvTTbTTGAGSMYnTTRWTKR
GC content	42.01%
Information content (bits; total / per base)	19.677 / 0.856
Data sources	ChIP-Seq
Aligned words	264

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.812	0.891	0.785	0.903	0.772	0.891	5.438	7.55	68.161	173.301

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF214-like {2.3.3.56} (TFClass)
TFClass ID	TFClass: 2.3.3.56.1
HGNC	HGNC:13006
MGI
EntrezGene (human)	GeneID:7761 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN214_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UL59 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN214.H12INVITRO.0.P.D.pcm
PWM	ZN214.H12INVITRO.0.P.D.pwm
PFM	ZN214.H12INVITRO.0.P.D.pfm
Alignment	ZN214.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN214.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN214.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN214.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN214.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN214.H12INVITRO.0.P.D_homer_format_0.001.txt ZN214.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN214.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	54.0	22.0	155.0	33.0
02	100.0	70.0	48.0	46.0
03	72.0	124.0	20.0	48.0
04	114.0	101.0	38.0	11.0
05	23.0	12.0	8.0	221.0
06	4.0	24.0	5.0	231.0
07	16.0	63.0	70.0	115.0
08	26.0	16.0	9.0	213.0
09	4.0	7.0	7.0	246.0
10	43.0	2.0	219.0	0.0
11	225.0	0.0	23.0	16.0
12	2.0	0.0	255.0	7.0
13	2.0	51.0	197.0	14.0
14	140.0	86.0	22.0	16.0
15	24.0	153.0	3.0	84.0
16	52.0	93.0	51.0	68.0
17	4.0	7.0	3.0	250.0
18	0.0	70.0	0.0	194.0
19	43.0	26.0	193.0	2.0
20	204.0	17.0	7.0	36.0
21	3.0	5.0	12.0	244.0
22	33.0	21.0	168.0	42.0
23	160.0	26.0	42.0	36.0

PFM

	A	C	G	T
01	0.205	0.083	0.587	0.125
02	0.379	0.265	0.182	0.174
03	0.273	0.47	0.076	0.182
04	0.432	0.383	0.144	0.042
05	0.087	0.045	0.03	0.837
06	0.015	0.091	0.019	0.875
07	0.061	0.239	0.265	0.436
08	0.098	0.061	0.034	0.807
09	0.015	0.027	0.027	0.932
10	0.163	0.008	0.83	0.0
11	0.852	0.0	0.087	0.061
12	0.008	0.0	0.966	0.027
13	0.008	0.193	0.746	0.053
14	0.53	0.326	0.083	0.061
15	0.091	0.58	0.011	0.318
16	0.197	0.352	0.193	0.258
17	0.015	0.027	0.011	0.947
18	0.0	0.265	0.0	0.735
19	0.163	0.098	0.731	0.008
20	0.773	0.064	0.027	0.136
21	0.011	0.019	0.045	0.924
22	0.125	0.08	0.636	0.159
23	0.606	0.098	0.159	0.136

PWM

	A	C	G	T
01	-0.196	-1.058	0.842	-0.673
02	0.408	0.058	-0.311	-0.352
03	0.085	0.621	-1.147	-0.311
04	0.538	0.418	-0.537	-1.693
05	-1.016	-1.616	-1.97	1.194
06	-2.525	-0.976	-2.355	1.238
07	-1.354	-0.046	0.058	0.546
08	-0.9	-1.354	-1.869	1.157
09	-2.525	-2.083	-2.083	1.3
10	-0.417	-2.989	1.185	-3.878
11	1.212	-3.878	-1.016	-1.354
12	-2.989	-3.878	1.336	-2.083
13	-2.989	-0.252	1.08	-1.477
14	0.741	0.26	-1.058	-1.354
15	-0.976	0.829	-2.73	0.237
16	-0.233	0.337	-0.252	0.029
17	-2.525	-2.083	-2.73	1.316
18	-3.878	0.058	-3.878	1.064
19	-0.417	-0.9	1.059	-2.989
20	1.114	-1.299	-2.083	-0.589
21	-2.73	-2.355	-1.616	1.292
22	-0.673	-1.102	0.922	-0.44
23	0.873	-0.9	-0.44	-0.589

Standard thresholds

P-value	Threshold
0.001	1.64796
0.0005	2.89111
0.0001	5.52851