ZN213.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN213.H12RSNP.0.P.D
Gene (human)	ZNF213 (GeneCards)
Gene synonyms (human)	ZKSCAN21
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	vRAMMbbRGGCRSMRRv
GC content	62.37%
Information content (bits; total / per base)	12.346 / 0.726
Data sources	ChIP-Seq
Aligned words	418

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.649	0.67	0.579	0.604	0.724	0.74	3.106	3.277	23.466	37.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF75-like {2.3.3.6} (TFClass)
TFClass ID	TFClass: 2.3.3.6.4
HGNC	HGNC:13005
MGI
EntrezGene (human)	GeneID:7760 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN213_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O14771 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN213.H12RSNP.0.P.D.pcm
PWM	ZN213.H12RSNP.0.P.D.pwm
PFM	ZN213.H12RSNP.0.P.D.pfm
Alignment	ZN213.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN213.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN213.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN213.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN213.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN213.H12RSNP.0.P.D_homer_format_0.001.txt ZN213.H12RSNP.0.P.D_homer_format_0.0005.txt ZN213.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	199.0	90.0	83.0	46.0
02	110.0	9.0	285.0	14.0
03	389.0	2.0	21.0	6.0
04	283.0	111.0	22.0	2.0
05	194.0	171.0	37.0	16.0
06	32.0	77.0	125.0	184.0
07	55.0	227.0	76.0	60.0
08	273.0	25.0	98.0	22.0
09	35.0	2.0	376.0	5.0
10	37.0	26.0	343.0	12.0
11	48.0	337.0	20.0	13.0
12	86.0	15.0	244.0	73.0
13	28.0	62.0	309.0	19.0
14	109.0	258.0	37.0	14.0
15	79.0	15.0	298.0	26.0
16	98.0	15.0	285.0	20.0
17	47.0	100.0	231.0	40.0

PFM

	A	C	G	T
01	0.476	0.215	0.199	0.11
02	0.263	0.022	0.682	0.033
03	0.931	0.005	0.05	0.014
04	0.677	0.266	0.053	0.005
05	0.464	0.409	0.089	0.038
06	0.077	0.184	0.299	0.44
07	0.132	0.543	0.182	0.144
08	0.653	0.06	0.234	0.053
09	0.084	0.005	0.9	0.012
10	0.089	0.062	0.821	0.029
11	0.115	0.806	0.048	0.031
12	0.206	0.036	0.584	0.175
13	0.067	0.148	0.739	0.045
14	0.261	0.617	0.089	0.033
15	0.189	0.036	0.713	0.062
16	0.234	0.036	0.682	0.048
17	0.112	0.239	0.553	0.096

PWM

	A	C	G	T
01	0.637	-0.147	-0.227	-0.803
02	0.051	-2.311	0.994	-1.922
03	1.304	-3.408	-1.55	-2.647
04	0.987	0.06	-1.506	-3.408
05	0.612	0.487	-1.013	-1.801
06	-1.152	-0.3	0.177	0.56
07	-0.629	0.768	-0.313	-0.544
08	0.951	-1.386	-0.063	-1.506
09	-1.066	-3.408	1.27	-2.79
10	-1.013	-1.349	1.179	-2.06
11	-0.761	1.161	-1.595	-1.989
12	-0.192	-1.86	0.84	-0.353
13	-1.279	-0.512	1.075	-1.643
14	0.042	0.895	-1.013	-1.922
15	-0.275	-1.86	1.039	-1.349
16	-0.063	-1.86	0.994	-1.595
17	-0.782	-0.043	0.785	-0.938

Standard thresholds

P-value	Threshold
0.001	4.22911
0.0005	5.13606
0.0001	7.03856