MotifZN213.H12INVIVO.0.P.C
Gene (human)ZNF213
(GeneCards)
Gene synonyms (human)ZKSCAN21
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length17
ConsensusvRAMMbbRGGCRSMRRv
GC content62.37%
Information content (bits; total / per base)12.346 / 0.726
Data sourcesChIP-Seq
Aligned words418

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.649 0.67 0.579 0.604 0.724 0.74 3.106 3.277 23.466 37.0
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF75-like {2.3.3.6} (TFClass)
TFClass IDTFClass: 2.3.3.6.4
HGNCHGNC:13005
MGI
EntrezGene (human)GeneID:7760
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN213_HUMAN
UniProt ID (mouse)
UniProt AC (human)O14771
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01199.090.083.046.0
02110.09.0285.014.0
03389.02.021.06.0
04283.0111.022.02.0
05194.0171.037.016.0
0632.077.0125.0184.0
0755.0227.076.060.0
08273.025.098.022.0
0935.02.0376.05.0
1037.026.0343.012.0
1148.0337.020.013.0
1286.015.0244.073.0
1328.062.0309.019.0
14109.0258.037.014.0
1579.015.0298.026.0
1698.015.0285.020.0
1747.0100.0231.040.0
PFM
ACGT
010.4760.2150.1990.11
020.2630.0220.6820.033
030.9310.0050.050.014
040.6770.2660.0530.005
050.4640.4090.0890.038
060.0770.1840.2990.44
070.1320.5430.1820.144
080.6530.060.2340.053
090.0840.0050.90.012
100.0890.0620.8210.029
110.1150.8060.0480.031
120.2060.0360.5840.175
130.0670.1480.7390.045
140.2610.6170.0890.033
150.1890.0360.7130.062
160.2340.0360.6820.048
170.1120.2390.5530.096
PWM
ACGT
010.637-0.147-0.227-0.803
020.051-2.3110.994-1.922
031.304-3.408-1.55-2.647
040.9870.06-1.506-3.408
050.6120.487-1.013-1.801
06-1.152-0.30.1770.56
07-0.6290.768-0.313-0.544
080.951-1.386-0.063-1.506
09-1.066-3.4081.27-2.79
10-1.013-1.3491.179-2.06
11-0.7611.161-1.595-1.989
12-0.192-1.860.84-0.353
13-1.279-0.5121.075-1.643
140.0420.895-1.013-1.922
15-0.275-1.861.039-1.349
16-0.063-1.860.994-1.595
17-0.782-0.0430.785-0.938
Standard thresholds
P-value Threshold
0.001 4.22911
0.0005 5.13606
0.0001 7.03856