ZN211.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN211.H12INVIVO.1.P.C
Gene (human)	ZNF211 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	23
Consensus	bddWRWWWRhRTGGTATATRhdb
GC content	29.57%
Information content (bits; total / per base)	20.446 / 0.889
Data sources	ChIP-Seq
Aligned words	297

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.839	0.888	0.795	0.831	0.844	0.909	6.375	6.713	78.42	237.678

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.6
HGNC	HGNC:13003
MGI
EntrezGene (human)	GeneID:10520 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN211_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q13398 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN211.H12INVIVO.1.P.C.pcm
PWM	ZN211.H12INVIVO.1.P.C.pwm
PFM	ZN211.H12INVIVO.1.P.C.pfm
Alignment	ZN211.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN211.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN211.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN211.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN211.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN211.H12INVIVO.1.P.C_homer_format_0.001.txt ZN211.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN211.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	21.0	105.0	45.0	126.0
02	90.0	10.0	46.0	151.0
03	77.0	19.0	66.0	135.0
04	38.0	16.0	25.0	218.0
05	36.0	8.0	229.0	24.0
06	47.0	14.0	17.0	219.0
07	61.0	15.0	47.0	174.0
08	182.0	3.0	11.0	101.0
09	163.0	16.0	87.0	31.0
10	73.0	58.0	43.0	123.0
11	179.0	13.0	98.0	7.0
12	1.0	6.0	1.0	289.0
13	22.0	0.0	272.0	3.0
14	6.0	3.0	285.0	3.0
15	0.0	0.0	4.0	293.0
16	278.0	2.0	12.0	5.0
17	2.0	2.0	2.0	291.0
18	271.0	3.0	18.0	5.0
19	2.0	7.0	18.0	270.0
20	185.0	33.0	64.0	15.0
21	118.0	31.0	18.0	130.0
22	83.0	23.0	89.0	102.0
23	29.0	104.0	32.0	132.0

PFM

	A	C	G	T
01	0.071	0.354	0.152	0.424
02	0.303	0.034	0.155	0.508
03	0.259	0.064	0.222	0.455
04	0.128	0.054	0.084	0.734
05	0.121	0.027	0.771	0.081
06	0.158	0.047	0.057	0.737
07	0.205	0.051	0.158	0.586
08	0.613	0.01	0.037	0.34
09	0.549	0.054	0.293	0.104
10	0.246	0.195	0.145	0.414
11	0.603	0.044	0.33	0.024
12	0.003	0.02	0.003	0.973
13	0.074	0.0	0.916	0.01
14	0.02	0.01	0.96	0.01
15	0.0	0.0	0.013	0.987
16	0.936	0.007	0.04	0.017
17	0.007	0.007	0.007	0.98
18	0.912	0.01	0.061	0.017
19	0.007	0.024	0.061	0.909
20	0.623	0.111	0.215	0.051
21	0.397	0.104	0.061	0.438
22	0.279	0.077	0.3	0.343
23	0.098	0.35	0.108	0.444

PWM

	A	C	G	T
01	-1.216	0.341	-0.489	0.521
02	0.189	-1.891	-0.467	0.7
03	0.036	-1.31	-0.115	0.589
04	-0.652	-1.469	-1.052	1.065
05	-0.704	-2.083	1.113	-1.091
06	-0.446	-1.591	-1.413	1.069
07	-0.192	-1.528	-0.446	0.841
08	0.885	-2.84	-1.807	0.303
09	0.776	-1.469	0.156	-0.848
10	-0.017	-0.242	-0.533	0.497
11	0.869	-1.658	0.273	-2.195
12	-3.441	-2.322	-3.441	1.345
13	-1.173	-3.973	1.285	-2.84
14	-2.322	-2.84	1.331	-2.84
15	-3.973	-3.973	-2.636	1.359
16	1.306	-3.096	-1.729	-2.466
17	-3.096	-3.096	-3.096	1.352
18	1.281	-2.84	-1.36	-2.466
19	-3.096	-2.195	-1.36	1.277
20	0.902	-0.788	-0.146	-1.528
21	0.456	-0.848	-1.36	0.552
22	0.109	-1.131	0.178	0.312
23	-0.911	0.332	-0.817	0.567

Standard thresholds

P-value	Threshold
0.001	0.97361
0.0005	2.29541
0.0001	5.10411