ZN205.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN205.H12INVITRO.0.P.D
Gene (human)	ZNF205 (GeneCards)
Gene synonyms (human)	ZNF210
Gene (mouse)	Zfp13
Gene synonyms (mouse)	Krox-8, Zfp-13
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	dGAGYRYYhRvdvbvbvhnvRSh
GC content	57.12%
Information content (bits; total / per base)	11.531 / 0.501
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.759	0.809	0.644	0.718	0.714	0.767	3.048	3.548	83.481	176.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.58
HGNC	HGNC:12996
MGI	MGI:99159
EntrezGene (human)	GeneID:7755 (SSTAR profile)
EntrezGene (mouse)	GeneID:22654 (SSTAR profile)
UniProt ID (human)	ZN205_HUMAN
UniProt ID (mouse)	ZFP13_MOUSE
UniProt AC (human)	O95201 (TFClass)
UniProt AC (mouse)	P10754 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN205.H12INVITRO.0.P.D.pcm
PWM	ZN205.H12INVITRO.0.P.D.pwm
PFM	ZN205.H12INVITRO.0.P.D.pfm
Alignment	ZN205.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN205.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN205.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN205.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN205.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN205.H12INVITRO.0.P.D_homer_format_0.001.txt ZN205.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN205.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	187.0	83.0	217.0	513.0
02	24.0	153.0	814.0	9.0
03	912.0	3.0	56.0	29.0
04	46.0	20.0	919.0	15.0
05	122.0	591.0	78.0	209.0
06	343.0	23.0	590.0	44.0
07	102.0	699.0	79.0	120.0
08	105.0	559.0	29.0	307.0
09	522.0	196.0	64.0	218.0
10	620.0	84.0	230.0	66.0
11	96.0	504.0	317.0	83.0
12	218.0	107.0	151.0	524.0
13	501.0	152.0	238.0	109.0
14	97.0	356.0	155.0	392.0
15	205.0	409.0	300.0	86.0
16	103.0	123.0	306.0	468.0
17	196.0	350.0	394.0	60.0
18	159.0	526.0	109.0	206.0
19	208.0	328.0	190.0	274.0
20	495.0	190.0	210.0	105.0
21	200.0	55.0	698.0	47.0
22	106.0	140.0	702.0	52.0
23	194.0	552.0	89.0	165.0

PFM

	A	C	G	T
01	0.187	0.083	0.217	0.513
02	0.024	0.153	0.814	0.009
03	0.912	0.003	0.056	0.029
04	0.046	0.02	0.919	0.015
05	0.122	0.591	0.078	0.209
06	0.343	0.023	0.59	0.044
07	0.102	0.699	0.079	0.12
08	0.105	0.559	0.029	0.307
09	0.522	0.196	0.064	0.218
10	0.62	0.084	0.23	0.066
11	0.096	0.504	0.317	0.083
12	0.218	0.107	0.151	0.524
13	0.501	0.152	0.238	0.109
14	0.097	0.356	0.155	0.392
15	0.205	0.409	0.3	0.086
16	0.103	0.123	0.306	0.468
17	0.196	0.35	0.394	0.06
18	0.159	0.526	0.109	0.206
19	0.208	0.328	0.19	0.274
20	0.495	0.19	0.21	0.105
21	0.2	0.055	0.698	0.047
22	0.106	0.14	0.702	0.052
23	0.194	0.552	0.089	0.165

PWM

	A	C	G	T
01	-0.288	-1.089	-0.141	0.715
02	-2.281	-0.487	1.176	-3.156
03	1.289	-3.975	-1.473	-2.103
04	-1.663	-2.45	1.297	-2.711
05	-0.71	0.856	-1.15	-0.178
06	0.314	-2.32	0.855	-1.706
07	-0.887	1.024	-1.137	-0.727
08	-0.858	0.801	-2.103	0.204
09	0.733	-0.241	-1.343	-0.136
10	0.904	-1.077	-0.083	-1.313
11	-0.946	0.698	0.236	-1.089
12	-0.136	-0.84	-0.5	0.736
13	0.692	-0.493	-0.049	-0.821
14	-0.936	0.351	-0.474	0.447
15	-0.197	0.49	0.181	-1.054
16	-0.877	-0.702	0.201	0.624
17	-0.241	0.335	0.452	-1.406
18	-0.449	0.74	-0.821	-0.192
19	-0.183	0.27	-0.272	0.091
20	0.68	-0.272	-0.173	-0.858
21	-0.221	-1.49	1.022	-1.642
22	-0.849	-0.574	1.028	-1.544
23	-0.252	0.788	-1.02	-0.412

Standard thresholds

P-value	Threshold
0.001	4.39196
0.0005	5.25291
0.0001	7.06056