MotifZN197.H12INVIVO.0.P.C
Gene (human)ZNF197
(GeneCards)
Gene synonyms (human)ZKSCAN9, ZNF166
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusYYYYbYbYTTGWCTTTKSYKKYYbb
GC content43.86%
Information content (bits; total / per base)17.913 / 0.717
Data sourcesChIP-Seq
Aligned words415

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (2) 0.837 0.837 0.789 0.789 0.889 0.889 6.701 6.701 119.721 119.721
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.228
HGNCHGNC:12988
MGI
EntrezGene (human)GeneID:10168
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN197_HUMAN
UniProt ID (mouse)
UniProt AC (human)O14709
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0137.0122.025.0231.0
0214.0208.043.0150.0
0312.0120.040.0243.0
0430.074.060.0251.0
0535.0216.075.089.0
0617.0117.033.0248.0
0742.0174.070.0129.0
0830.0134.035.0216.0
0910.039.022.0344.0
104.016.029.0366.0
112.09.0393.011.0
1280.043.024.0268.0
130.0405.04.06.0
143.031.03.0378.0
150.031.06.0378.0
1617.057.08.0333.0
1723.021.0237.0134.0
1847.091.0252.025.0
1930.0107.028.0250.0
2034.018.0241.0122.0
2123.060.096.0236.0
2227.057.033.0298.0
2312.0184.055.0164.0
2433.0151.039.0192.0
2553.0105.0109.0148.0
PFM
ACGT
010.0890.2940.060.557
020.0340.5010.1040.361
030.0290.2890.0960.586
040.0720.1780.1450.605
050.0840.520.1810.214
060.0410.2820.080.598
070.1010.4190.1690.311
080.0720.3230.0840.52
090.0240.0940.0530.829
100.010.0390.070.882
110.0050.0220.9470.027
120.1930.1040.0580.646
130.00.9760.010.014
140.0070.0750.0070.911
150.00.0750.0140.911
160.0410.1370.0190.802
170.0550.0510.5710.323
180.1130.2190.6070.06
190.0720.2580.0670.602
200.0820.0430.5810.294
210.0550.1450.2310.569
220.0650.1370.080.718
230.0290.4430.1330.395
240.080.3640.0940.463
250.1280.2530.2630.357
PWM
ACGT
01-1.0060.16-1.3790.793
02-1.9150.688-0.8610.364
03-2.0530.144-0.9310.843
04-1.206-0.332-0.5370.875
05-1.0590.726-0.319-0.151
06-1.7380.119-1.1150.863
07-0.8830.511-0.3870.215
08-1.2060.253-1.0590.726
09-2.213-0.955-1.4991.189
10-2.95-1.794-1.2381.25
11-3.402-2.3041.321-2.13
12-0.256-0.861-1.4170.94
13-4.2461.351-2.95-2.641
14-3.151-1.175-3.1511.282
15-4.246-1.175-2.6411.282
16-1.738-0.587-2.4041.156
17-1.457-1.5430.8180.253
18-0.775-0.1290.879-1.379
19-1.2060.03-1.2720.871
20-1.087-1.6860.8350.16
21-1.457-0.537-0.0760.814
22-1.306-0.587-1.1151.046
23-2.0530.567-0.6220.453
24-1.1150.371-0.9550.609
25-0.6580.0120.0490.351
Standard thresholds
P-value Threshold
0.001 2.36611
0.0005 3.52991
0.0001 5.99576