ZN197.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN197.H12INVIVO.0.P.C
Gene (human)	ZNF197 (GeneCards)
Gene synonyms (human)	ZKSCAN9, ZNF166
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	YYYYbYbYTTGWCTTTKSYKKYYbb
GC content	43.86%
Information content (bits; total / per base)	17.913 / 0.717
Data sources	ChIP-Seq
Aligned words	415

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.837	0.837	0.789	0.789	0.889	0.889	6.701	6.701	119.721	119.721

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.228
HGNC	HGNC:12988
MGI
EntrezGene (human)	GeneID:10168 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN197_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O14709 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN197.H12INVIVO.0.P.C.pcm
PWM	ZN197.H12INVIVO.0.P.C.pwm
PFM	ZN197.H12INVIVO.0.P.C.pfm
Alignment	ZN197.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN197.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN197.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN197.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN197.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN197.H12INVIVO.0.P.C_homer_format_0.001.txt ZN197.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN197.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	37.0	122.0	25.0	231.0
02	14.0	208.0	43.0	150.0
03	12.0	120.0	40.0	243.0
04	30.0	74.0	60.0	251.0
05	35.0	216.0	75.0	89.0
06	17.0	117.0	33.0	248.0
07	42.0	174.0	70.0	129.0
08	30.0	134.0	35.0	216.0
09	10.0	39.0	22.0	344.0
10	4.0	16.0	29.0	366.0
11	2.0	9.0	393.0	11.0
12	80.0	43.0	24.0	268.0
13	0.0	405.0	4.0	6.0
14	3.0	31.0	3.0	378.0
15	0.0	31.0	6.0	378.0
16	17.0	57.0	8.0	333.0
17	23.0	21.0	237.0	134.0
18	47.0	91.0	252.0	25.0
19	30.0	107.0	28.0	250.0
20	34.0	18.0	241.0	122.0
21	23.0	60.0	96.0	236.0
22	27.0	57.0	33.0	298.0
23	12.0	184.0	55.0	164.0
24	33.0	151.0	39.0	192.0
25	53.0	105.0	109.0	148.0

PFM

	A	C	G	T
01	0.089	0.294	0.06	0.557
02	0.034	0.501	0.104	0.361
03	0.029	0.289	0.096	0.586
04	0.072	0.178	0.145	0.605
05	0.084	0.52	0.181	0.214
06	0.041	0.282	0.08	0.598
07	0.101	0.419	0.169	0.311
08	0.072	0.323	0.084	0.52
09	0.024	0.094	0.053	0.829
10	0.01	0.039	0.07	0.882
11	0.005	0.022	0.947	0.027
12	0.193	0.104	0.058	0.646
13	0.0	0.976	0.01	0.014
14	0.007	0.075	0.007	0.911
15	0.0	0.075	0.014	0.911
16	0.041	0.137	0.019	0.802
17	0.055	0.051	0.571	0.323
18	0.113	0.219	0.607	0.06
19	0.072	0.258	0.067	0.602
20	0.082	0.043	0.581	0.294
21	0.055	0.145	0.231	0.569
22	0.065	0.137	0.08	0.718
23	0.029	0.443	0.133	0.395
24	0.08	0.364	0.094	0.463
25	0.128	0.253	0.263	0.357

PWM

	A	C	G	T
01	-1.006	0.16	-1.379	0.793
02	-1.915	0.688	-0.861	0.364
03	-2.053	0.144	-0.931	0.843
04	-1.206	-0.332	-0.537	0.875
05	-1.059	0.726	-0.319	-0.151
06	-1.738	0.119	-1.115	0.863
07	-0.883	0.511	-0.387	0.215
08	-1.206	0.253	-1.059	0.726
09	-2.213	-0.955	-1.499	1.189
10	-2.95	-1.794	-1.238	1.25
11	-3.402	-2.304	1.321	-2.13
12	-0.256	-0.861	-1.417	0.94
13	-4.246	1.351	-2.95	-2.641
14	-3.151	-1.175	-3.151	1.282
15	-4.246	-1.175	-2.641	1.282
16	-1.738	-0.587	-2.404	1.156
17	-1.457	-1.543	0.818	0.253
18	-0.775	-0.129	0.879	-1.379
19	-1.206	0.03	-1.272	0.871
20	-1.087	-1.686	0.835	0.16
21	-1.457	-0.537	-0.076	0.814
22	-1.306	-0.587	-1.115	1.046
23	-2.053	0.567	-0.622	0.453
24	-1.115	0.371	-0.955	0.609
25	-0.658	0.012	0.049	0.351

Standard thresholds

P-value	Threshold
0.001	2.36611
0.0005	3.52991
0.0001	5.99576