MotifZN189.H12INVIVO.0.P.B
Gene (human)ZNF189
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusbhKKCYSTTCChbbb
GC content56.31%
Information content (bits; total / per base)12.999 / 0.867
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.86 0.934 0.782 0.865 0.901 0.948 4.251 5.705 248.137 459.319
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.197
HGNCHGNC:12980
MGI
EntrezGene (human)GeneID:7743
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN189_HUMAN
UniProt ID (mouse)
UniProt AC (human)O75820
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01132.0463.0179.0226.0
02344.0300.080.0276.0
038.0217.0218.0557.0
0456.033.0525.0386.0
0519.0923.023.035.0
0611.0184.0100.0705.0
0721.0209.0711.059.0
0824.016.015.0945.0
094.08.011.0977.0
101.0983.02.014.0
113.0986.01.010.0
12349.0448.025.0178.0
1345.0259.0254.0442.0
1457.0515.0274.0154.0
1584.0394.091.0431.0
PFM
ACGT
010.1320.4630.1790.226
020.3440.30.080.276
030.0080.2170.2180.557
040.0560.0330.5250.386
050.0190.9230.0230.035
060.0110.1840.10.705
070.0210.2090.7110.059
080.0240.0160.0150.945
090.0040.0080.0110.977
100.0010.9830.0020.014
110.0030.9860.0010.01
120.3490.4480.0250.178
130.0450.2590.2540.442
140.0570.5150.2740.154
150.0840.3940.0910.431
PWM
ACGT
01-0.6330.613-0.331-0.1
020.3170.181-1.1250.098
03-3.253-0.141-0.1360.797
04-1.473-1.9810.7380.432
05-2.4971.301-2.32-1.925
06-2.985-0.304-0.9061.032
07-2.405-0.1781.041-1.422
08-2.281-2.653-2.7111.325
09-3.783-3.253-2.9851.358
10-4.5251.364-4.213-2.773
11-3.9751.367-4.525-3.066
120.3320.58-2.243-0.337
13-1.6840.0350.0160.567
14-1.4550.7190.091-0.48
15-1.0770.452-0.9990.542
Standard thresholds
P-value Threshold
0.001 3.72111
0.0005 4.81371
0.0001 7.05636