ZN189.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN189.H12INVIVO.0.P.B
Gene (human)	ZNF189 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	15
Consensus	bhKKCYSTTCChbbb
GC content	56.31%
Information content (bits; total / per base)	12.999 / 0.867
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.86	0.934	0.782	0.865	0.901	0.948	4.251	5.705	248.137	459.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.197
HGNC	HGNC:12980
MGI
EntrezGene (human)	GeneID:7743 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN189_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75820 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN189.H12INVIVO.0.P.B.pcm
PWM	ZN189.H12INVIVO.0.P.B.pwm
PFM	ZN189.H12INVIVO.0.P.B.pfm
Alignment	ZN189.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN189.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN189.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN189.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN189.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN189.H12INVIVO.0.P.B_homer_format_0.001.txt ZN189.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN189.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	132.0	463.0	179.0	226.0
02	344.0	300.0	80.0	276.0
03	8.0	217.0	218.0	557.0
04	56.0	33.0	525.0	386.0
05	19.0	923.0	23.0	35.0
06	11.0	184.0	100.0	705.0
07	21.0	209.0	711.0	59.0
08	24.0	16.0	15.0	945.0
09	4.0	8.0	11.0	977.0
10	1.0	983.0	2.0	14.0
11	3.0	986.0	1.0	10.0
12	349.0	448.0	25.0	178.0
13	45.0	259.0	254.0	442.0
14	57.0	515.0	274.0	154.0
15	84.0	394.0	91.0	431.0

PFM

	A	C	G	T
01	0.132	0.463	0.179	0.226
02	0.344	0.3	0.08	0.276
03	0.008	0.217	0.218	0.557
04	0.056	0.033	0.525	0.386
05	0.019	0.923	0.023	0.035
06	0.011	0.184	0.1	0.705
07	0.021	0.209	0.711	0.059
08	0.024	0.016	0.015	0.945
09	0.004	0.008	0.011	0.977
10	0.001	0.983	0.002	0.014
11	0.003	0.986	0.001	0.01
12	0.349	0.448	0.025	0.178
13	0.045	0.259	0.254	0.442
14	0.057	0.515	0.274	0.154
15	0.084	0.394	0.091	0.431

PWM

	A	C	G	T
01	-0.633	0.613	-0.331	-0.1
02	0.317	0.181	-1.125	0.098
03	-3.253	-0.141	-0.136	0.797
04	-1.473	-1.981	0.738	0.432
05	-2.497	1.301	-2.32	-1.925
06	-2.985	-0.304	-0.906	1.032
07	-2.405	-0.178	1.041	-1.422
08	-2.281	-2.653	-2.711	1.325
09	-3.783	-3.253	-2.985	1.358
10	-4.525	1.364	-4.213	-2.773
11	-3.975	1.367	-4.525	-3.066
12	0.332	0.58	-2.243	-0.337
13	-1.684	0.035	0.016	0.567
14	-1.455	0.719	0.091	-0.48
15	-1.077	0.452	-0.999	0.542

Standard thresholds

P-value	Threshold
0.001	3.72111
0.0005	4.81371
0.0001	7.05636