MotifZN189.H12INVITRO.1.P.D
Gene (human)ZNF189
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length24
ConsensusbbbbbbbYhbhYKCYSTTCChbbb
GC content57.89%
Information content (bits; total / per base)15.227 / 0.634
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.855 0.928 0.783 0.885 0.915 0.949 5.924 8.488 255.149 434.824
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.197
HGNCHGNC:12980
MGI
EntrezGene (human)GeneID:7743
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN189_HUMAN
UniProt ID (mouse)
UniProt AC (human)O75820
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01151.0226.0471.0152.0
02120.0527.0188.0165.0
0362.0549.0159.0230.0
0480.0267.0135.0518.0
0568.0261.0139.0532.0
06111.0320.0129.0440.0
0795.0175.0587.0143.0
0863.0682.0117.0138.0
09392.0316.0103.0189.0
10115.0475.0178.0232.0
11328.0309.099.0264.0
1218.0231.0223.0528.0
1370.029.0516.0385.0
1413.0933.017.037.0
1516.0207.0102.0675.0
1628.0228.0677.067.0
1727.031.024.0918.0
184.022.027.0947.0
190.0974.04.022.0
202.0986.05.07.0
21335.0456.018.0191.0
2255.0248.0252.0445.0
2354.0525.0274.0147.0
2495.0371.0102.0432.0
PFM
ACGT
010.1510.2260.4710.152
020.120.5270.1880.165
030.0620.5490.1590.23
040.080.2670.1350.518
050.0680.2610.1390.532
060.1110.320.1290.44
070.0950.1750.5870.143
080.0630.6820.1170.138
090.3920.3160.1030.189
100.1150.4750.1780.232
110.3280.3090.0990.264
120.0180.2310.2230.528
130.070.0290.5160.385
140.0130.9330.0170.037
150.0160.2070.1020.675
160.0280.2280.6770.067
170.0270.0310.0240.918
180.0040.0220.0270.947
190.00.9740.0040.022
200.0020.9860.0050.007
210.3350.4560.0180.191
220.0550.2480.2520.445
230.0540.5250.2740.147
240.0950.3710.1020.432
PWM
ACGT
01-0.5-0.10.63-0.493
02-0.7270.742-0.283-0.412
03-1.3740.783-0.449-0.083
04-1.1250.065-0.610.725
05-1.2840.043-0.5820.752
06-0.8030.245-0.6550.562
07-0.956-0.3540.85-0.553
08-1.3580.999-0.752-0.589
090.4470.233-0.877-0.278
10-0.7690.639-0.337-0.074
110.270.211-0.9160.054
12-2.546-0.078-0.1130.744
13-1.255-2.1030.7210.429
14-2.8391.312-2.598-1.872
15-2.653-0.187-0.8870.989
16-2.136-0.0910.992-1.298
17-2.171-2.04-2.2811.296
18-3.783-2.362-2.1711.327
19-4.9821.355-3.783-2.362
20-4.2131.367-3.622-3.362
210.2910.598-2.546-0.267
22-1.49-0.0080.0080.574
23-1.5080.7380.091-0.526
24-0.9560.393-0.8870.544
Standard thresholds
P-value Threshold
0.001 3.08596
0.0005 4.21216
0.0001 6.56581