ZN189.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN189.H12INVITRO.1.P.D
Gene (human)	ZNF189 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	24
Consensus	bbbbbbbYhbhYKCYSTTCChbbb
GC content	57.89%
Information content (bits; total / per base)	15.227 / 0.634
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.855	0.928	0.783	0.885	0.915	0.949	5.924	8.488	255.149	434.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.197
HGNC	HGNC:12980
MGI
EntrezGene (human)	GeneID:7743 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN189_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75820 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN189.H12INVITRO.1.P.D.pcm
PWM	ZN189.H12INVITRO.1.P.D.pwm
PFM	ZN189.H12INVITRO.1.P.D.pfm
Alignment	ZN189.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN189.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN189.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN189.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN189.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN189.H12INVITRO.1.P.D_homer_format_0.001.txt ZN189.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN189.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	151.0	226.0	471.0	152.0
02	120.0	527.0	188.0	165.0
03	62.0	549.0	159.0	230.0
04	80.0	267.0	135.0	518.0
05	68.0	261.0	139.0	532.0
06	111.0	320.0	129.0	440.0
07	95.0	175.0	587.0	143.0
08	63.0	682.0	117.0	138.0
09	392.0	316.0	103.0	189.0
10	115.0	475.0	178.0	232.0
11	328.0	309.0	99.0	264.0
12	18.0	231.0	223.0	528.0
13	70.0	29.0	516.0	385.0
14	13.0	933.0	17.0	37.0
15	16.0	207.0	102.0	675.0
16	28.0	228.0	677.0	67.0
17	27.0	31.0	24.0	918.0
18	4.0	22.0	27.0	947.0
19	0.0	974.0	4.0	22.0
20	2.0	986.0	5.0	7.0
21	335.0	456.0	18.0	191.0
22	55.0	248.0	252.0	445.0
23	54.0	525.0	274.0	147.0
24	95.0	371.0	102.0	432.0

PFM

	A	C	G	T
01	0.151	0.226	0.471	0.152
02	0.12	0.527	0.188	0.165
03	0.062	0.549	0.159	0.23
04	0.08	0.267	0.135	0.518
05	0.068	0.261	0.139	0.532
06	0.111	0.32	0.129	0.44
07	0.095	0.175	0.587	0.143
08	0.063	0.682	0.117	0.138
09	0.392	0.316	0.103	0.189
10	0.115	0.475	0.178	0.232
11	0.328	0.309	0.099	0.264
12	0.018	0.231	0.223	0.528
13	0.07	0.029	0.516	0.385
14	0.013	0.933	0.017	0.037
15	0.016	0.207	0.102	0.675
16	0.028	0.228	0.677	0.067
17	0.027	0.031	0.024	0.918
18	0.004	0.022	0.027	0.947
19	0.0	0.974	0.004	0.022
20	0.002	0.986	0.005	0.007
21	0.335	0.456	0.018	0.191
22	0.055	0.248	0.252	0.445
23	0.054	0.525	0.274	0.147
24	0.095	0.371	0.102	0.432

PWM

	A	C	G	T
01	-0.5	-0.1	0.63	-0.493
02	-0.727	0.742	-0.283	-0.412
03	-1.374	0.783	-0.449	-0.083
04	-1.125	0.065	-0.61	0.725
05	-1.284	0.043	-0.582	0.752
06	-0.803	0.245	-0.655	0.562
07	-0.956	-0.354	0.85	-0.553
08	-1.358	0.999	-0.752	-0.589
09	0.447	0.233	-0.877	-0.278
10	-0.769	0.639	-0.337	-0.074
11	0.27	0.211	-0.916	0.054
12	-2.546	-0.078	-0.113	0.744
13	-1.255	-2.103	0.721	0.429
14	-2.839	1.312	-2.598	-1.872
15	-2.653	-0.187	-0.887	0.989
16	-2.136	-0.091	0.992	-1.298
17	-2.171	-2.04	-2.281	1.296
18	-3.783	-2.362	-2.171	1.327
19	-4.982	1.355	-3.783	-2.362
20	-4.213	1.367	-3.622	-3.362
21	0.291	0.598	-2.546	-0.267
22	-1.49	-0.008	0.008	0.574
23	-1.508	0.738	0.091	-0.526
24	-0.956	0.393	-0.887	0.544

Standard thresholds

P-value	Threshold
0.001	3.08596
0.0005	4.21216
0.0001	6.56581