ZN180.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN180.H12RSNP.0.P.D
Gene (human)	ZNF180 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	vRGGvRbRGhGRRGvSKGnGGSdvv
GC content	68.87%
Information content (bits; total / per base)	18.125 / 0.725
Data sources	ChIP-Seq
Aligned words	600

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.851	0.872	0.789	0.811	0.901	0.926	6.967	7.386	125.0	126.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF180-like {2.3.3.58} (TFClass)
TFClass ID	TFClass: 2.3.3.58.1
HGNC	HGNC:12970
MGI
EntrezGene (human)	GeneID:7733 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN180_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UJW8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN180.H12RSNP.0.P.D.pcm
PWM	ZN180.H12RSNP.0.P.D.pwm
PFM	ZN180.H12RSNP.0.P.D.pfm
Alignment	ZN180.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN180.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN180.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN180.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN180.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN180.H12RSNP.0.P.D_homer_format_0.001.txt ZN180.H12RSNP.0.P.D_homer_format_0.0005.txt ZN180.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	343.0	83.0	125.0	49.0
02	72.0	43.0	456.0	29.0
03	55.0	25.0	504.0	16.0
04	19.0	56.0	518.0	7.0
05	303.0	145.0	120.0	32.0
06	114.0	79.0	359.0	48.0
07	62.0	99.0	237.0	202.0
08	107.0	31.0	448.0	14.0
09	26.0	65.0	489.0	20.0
10	101.0	126.0	73.0	300.0
11	58.0	9.0	526.0	7.0
12	98.0	39.0	450.0	13.0
13	100.0	55.0	428.0	17.0
14	12.0	6.0	578.0	4.0
15	357.0	101.0	90.0	52.0
16	26.0	366.0	172.0	36.0
17	23.0	80.0	87.0	410.0
18	42.0	38.0	495.0	25.0
19	77.0	174.0	154.0	195.0
20	37.0	6.0	547.0	10.0
21	34.0	43.0	510.0	13.0
22	72.0	389.0	81.0	58.0
23	224.0	86.0	203.0	87.0
24	285.0	111.0	162.0	42.0
25	296.0	67.0	196.0	41.0

PFM

	A	C	G	T
01	0.572	0.138	0.208	0.082
02	0.12	0.072	0.76	0.048
03	0.092	0.042	0.84	0.027
04	0.032	0.093	0.863	0.012
05	0.505	0.242	0.2	0.053
06	0.19	0.132	0.598	0.08
07	0.103	0.165	0.395	0.337
08	0.178	0.052	0.747	0.023
09	0.043	0.108	0.815	0.033
10	0.168	0.21	0.122	0.5
11	0.097	0.015	0.877	0.012
12	0.163	0.065	0.75	0.022
13	0.167	0.092	0.713	0.028
14	0.02	0.01	0.963	0.007
15	0.595	0.168	0.15	0.087
16	0.043	0.61	0.287	0.06
17	0.038	0.133	0.145	0.683
18	0.07	0.063	0.825	0.042
19	0.128	0.29	0.257	0.325
20	0.062	0.01	0.912	0.017
21	0.057	0.072	0.85	0.022
22	0.12	0.648	0.135	0.097
23	0.373	0.143	0.338	0.145
24	0.475	0.185	0.27	0.07
25	0.493	0.112	0.327	0.068

PWM

	A	C	G	T
01	0.821	-0.583	-0.18	-1.097
02	-0.723	-1.224	1.105	-1.6
03	-0.985	-1.74	1.205	-2.153
04	-1.996	-0.968	1.232	-2.87
05	0.698	-0.034	-0.221	-1.507
06	-0.271	-0.632	0.867	-1.117
07	-0.869	-0.41	0.454	0.295
08	-0.334	-1.537	1.087	-2.274
09	-1.703	-0.823	1.174	-1.949
10	-0.39	-0.172	-0.709	0.688
11	-0.934	-2.66	1.247	-2.87
12	-0.42	-1.317	1.092	-2.34
13	-0.4	-0.985	1.042	-2.098
14	-2.411	-2.993	1.341	-3.299
15	0.861	-0.39	-0.504	-1.04
16	-1.703	0.886	0.136	-1.394
17	-1.819	-0.619	-0.537	0.999
18	-1.246	-1.342	1.187	-1.74
19	-0.657	0.147	0.026	0.26
20	-1.368	-2.993	1.286	-2.57
21	-1.449	-1.224	1.216	-2.34
22	-0.723	0.946	-0.607	-0.934
23	0.398	-0.548	0.3	-0.537
24	0.637	-0.297	0.076	-1.246
25	0.675	-0.793	0.265	-1.269

Standard thresholds

P-value	Threshold
0.001	2.39676
0.0005	3.52766
0.0001	5.94036