MotifZN180.H12INVIVO.0.P.C
Gene (human)ZNF180
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusvRGGvRbRGhGRRGvSKGnGGSdvv
GC content68.87%
Information content (bits; total / per base)18.125 / 0.725
Data sourcesChIP-Seq
Aligned words600

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.851 0.872 0.789 0.811 0.901 0.926 6.967 7.386 125.0 126.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF180-like {2.3.3.58} (TFClass)
TFClass IDTFClass: 2.3.3.58.1
HGNCHGNC:12970
MGI
EntrezGene (human)GeneID:7733
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN180_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9UJW8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01343.083.0125.049.0
0272.043.0456.029.0
0355.025.0504.016.0
0419.056.0518.07.0
05303.0145.0120.032.0
06114.079.0359.048.0
0762.099.0237.0202.0
08107.031.0448.014.0
0926.065.0489.020.0
10101.0126.073.0300.0
1158.09.0526.07.0
1298.039.0450.013.0
13100.055.0428.017.0
1412.06.0578.04.0
15357.0101.090.052.0
1626.0366.0172.036.0
1723.080.087.0410.0
1842.038.0495.025.0
1977.0174.0154.0195.0
2037.06.0547.010.0
2134.043.0510.013.0
2272.0389.081.058.0
23224.086.0203.087.0
24285.0111.0162.042.0
25296.067.0196.041.0
PFM
ACGT
010.5720.1380.2080.082
020.120.0720.760.048
030.0920.0420.840.027
040.0320.0930.8630.012
050.5050.2420.20.053
060.190.1320.5980.08
070.1030.1650.3950.337
080.1780.0520.7470.023
090.0430.1080.8150.033
100.1680.210.1220.5
110.0970.0150.8770.012
120.1630.0650.750.022
130.1670.0920.7130.028
140.020.010.9630.007
150.5950.1680.150.087
160.0430.610.2870.06
170.0380.1330.1450.683
180.070.0630.8250.042
190.1280.290.2570.325
200.0620.010.9120.017
210.0570.0720.850.022
220.120.6480.1350.097
230.3730.1430.3380.145
240.4750.1850.270.07
250.4930.1120.3270.068
PWM
ACGT
010.821-0.583-0.18-1.097
02-0.723-1.2241.105-1.6
03-0.985-1.741.205-2.153
04-1.996-0.9681.232-2.87
050.698-0.034-0.221-1.507
06-0.271-0.6320.867-1.117
07-0.869-0.410.4540.295
08-0.334-1.5371.087-2.274
09-1.703-0.8231.174-1.949
10-0.39-0.172-0.7090.688
11-0.934-2.661.247-2.87
12-0.42-1.3171.092-2.34
13-0.4-0.9851.042-2.098
14-2.411-2.9931.341-3.299
150.861-0.39-0.504-1.04
16-1.7030.8860.136-1.394
17-1.819-0.619-0.5370.999
18-1.246-1.3421.187-1.74
19-0.6570.1470.0260.26
20-1.368-2.9931.286-2.57
21-1.449-1.2241.216-2.34
22-0.7230.946-0.607-0.934
230.398-0.5480.3-0.537
240.637-0.2970.076-1.246
250.675-0.7930.265-1.269
Standard thresholds
P-value Threshold
0.001 2.39676
0.0005 3.52766
0.0001 5.94036