ZN174.H12INVIVO.0.M.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN174.H12INVIVO.0.M.D
Gene (human)	ZNF174 (GeneCards)
Gene synonyms (human)	ZSCAN8
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	nbnGSCRAGTGATYGvY
GC content	59.6%
Information content (bits; total / per base)	19.757 / 1.162
Data sources	Methyl-HT-SELEX
Aligned words	9179

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	0.999	0.999	0.955	0.957
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	0.999	0.999	0.955	0.957

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	SCAN {2.3.2.3} (TFClass)
TFClass ID	TFClass: 2.3.2.3.2
HGNC	HGNC:12963
MGI
EntrezGene (human)	GeneID:7727 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN174_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15697 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZN174.H12INVIVO.0.M.D.pcm
PWM	ZN174.H12INVIVO.0.M.D.pwm
PFM	ZN174.H12INVIVO.0.M.D.pfm
Alignment	ZN174.H12INVIVO.0.M.D.words.tsv
Threshold to P-value map	ZN174.H12INVIVO.0.M.D.thr
Motif in other formats
JASPAR format	ZN174.H12INVIVO.0.M.D_jaspar_format.txt
MEME format	ZN174.H12INVIVO.0.M.D_meme_format.meme
Transfac format	ZN174.H12INVIVO.0.M.D_transfac_format.txt
Homer format	ZN174.H12INVIVO.0.M.D_homer_format_0.001.txt ZN174.H12INVIVO.0.M.D_homer_format_0.0005.txt ZN174.H12INVIVO.0.M.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1327.5	2491.5	2795.5	2564.5
02	1034.5	2633.5	1879.5	3631.5
03	1727.0	1488.0	2916.0	3048.0
04	294.0	120.0	8437.0	328.0
05	397.0	1798.0	5848.0	1136.0
06	35.0	9102.0	17.0	25.0
07	3426.0	106.0	5535.0	112.0
08	9142.0	6.0	30.0	1.0
09	147.0	3.0	8858.0	171.0
10	0.0	33.0	3.0	9143.0
11	22.0	0.0	9153.0	4.0
12	9167.0	8.0	2.0	2.0
13	2.0	945.0	7.0	8225.0
14	24.0	6364.0	227.0	2564.0
15	74.0	7.0	9046.0	52.0
16	1571.0	1974.0	4641.0	993.0
17	996.0	5723.0	800.0	1660.0

PFM

	A	C	G	T
01	0.145	0.271	0.305	0.279
02	0.113	0.287	0.205	0.396
03	0.188	0.162	0.318	0.332
04	0.032	0.013	0.919	0.036
05	0.043	0.196	0.637	0.124
06	0.004	0.992	0.002	0.003
07	0.373	0.012	0.603	0.012
08	0.996	0.001	0.003	0.0
09	0.016	0.0	0.965	0.019
10	0.0	0.004	0.0	0.996
11	0.002	0.0	0.997	0.0
12	0.999	0.001	0.0	0.0
13	0.0	0.103	0.001	0.896
14	0.003	0.693	0.025	0.279
15	0.008	0.001	0.986	0.006
16	0.171	0.215	0.506	0.108
17	0.109	0.623	0.087	0.181

PWM

	A	C	G	T
01	-0.547	0.082	0.197	0.111
02	-0.795	0.138	-0.199	0.459
03	-0.284	-0.433	0.239	0.284
04	-2.048	-2.933	1.301	-1.939
05	-1.75	-0.244	0.935	-0.702
06	-4.121	1.377	-4.78	-4.433
07	0.4	-3.055	0.88	-3.001
08	1.382	-5.625	-4.265	-6.551
09	-2.734	-6.075	1.35	-2.584
10	-6.915	-4.176	-6.075	1.382
11	-4.55	-6.915	1.383	-5.902
12	1.384	-5.409	-6.285	-6.285
13	-6.285	-0.886	-5.511	1.276
14	-4.471	1.019	-2.304	0.111
15	-3.405	-5.511	1.371	-3.745
16	-0.378	-0.15	0.704	-0.836
17	-0.833	0.913	-1.052	-0.323

Standard thresholds

P-value	Threshold
0.001	-2.41914
0.0005	-0.55939
0.0001	3.33616