ZN165.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN165.H12INVITRO.0.P.D
Gene (human)	ZNF165 (GeneCards)
Gene synonyms (human)	ZPF165, ZSCAN7
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	bdKCCKGSRCChCCYY
GC content	67.99%
Information content (bits; total / per base)	13.974 / 0.873
Data sources	ChIP-Seq
Aligned words	272

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.91	0.946	0.877	0.916	0.912	0.959	4.318	4.615	71.174	90.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.32
HGNC	HGNC:12953
MGI
EntrezGene (human)	GeneID:7718 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN165_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P49910 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN165.H12INVITRO.0.P.D.pcm
PWM	ZN165.H12INVITRO.0.P.D.pwm
PFM	ZN165.H12INVITRO.0.P.D.pfm
Alignment	ZN165.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN165.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN165.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN165.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN165.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN165.H12INVITRO.0.P.D_homer_format_0.001.txt ZN165.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN165.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	38.0	121.0	54.0	59.0
02	41.0	13.0	69.0	149.0
03	9.0	21.0	214.0	28.0
04	12.0	245.0	9.0	6.0
05	3.0	266.0	2.0	1.0
06	12.0	18.0	46.0	196.0
07	2.0	14.0	248.0	8.0
08	13.0	166.0	65.0	28.0
09	110.0	7.0	121.0	34.0
10	1.0	200.0	6.0	65.0
11	2.0	248.0	7.0	15.0
12	98.0	96.0	10.0	68.0
13	2.0	223.0	13.0	34.0
14	17.0	233.0	4.0	18.0
15	27.0	89.0	14.0	142.0
16	6.0	95.0	22.0	149.0

PFM

	A	C	G	T
01	0.14	0.445	0.199	0.217
02	0.151	0.048	0.254	0.548
03	0.033	0.077	0.787	0.103
04	0.044	0.901	0.033	0.022
05	0.011	0.978	0.007	0.004
06	0.044	0.066	0.169	0.721
07	0.007	0.051	0.912	0.029
08	0.048	0.61	0.239	0.103
09	0.404	0.026	0.445	0.125
10	0.004	0.735	0.022	0.239
11	0.007	0.912	0.026	0.055
12	0.36	0.353	0.037	0.25
13	0.007	0.82	0.048	0.125
14	0.063	0.857	0.015	0.066
15	0.099	0.327	0.051	0.522
16	0.022	0.349	0.081	0.548

PWM

	A	C	G	T
01	-0.566	0.567	-0.225	-0.139
02	-0.493	-1.573	0.014	0.773
03	-1.898	-1.131	1.133	-0.859
04	-1.645	1.267	-1.898	-2.238
05	-2.758	1.349	-3.016	-3.364
06	-1.645	-1.275	-0.381	1.045
07	-3.016	-1.505	1.279	-1.999
08	-1.573	0.88	-0.044	-0.859
09	0.473	-2.112	0.567	-0.673
10	-3.364	1.065	-2.238	-0.044
11	-3.016	1.279	-2.112	-1.443
12	0.359	0.339	-1.806	0.0
13	-3.016	1.174	-1.573	-0.673
14	-1.327	1.217	-2.553	-1.275
15	-0.893	0.264	-1.505	0.726
16	-2.238	0.329	-1.087	0.773

Standard thresholds

P-value	Threshold
0.001	3.76286
0.0005	4.76736
0.0001	6.87711