ZN160.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN160.H12INVIVO.0.P.C
Gene (human)	ZNF160 (GeneCards)
Gene synonyms (human)	KIAA1611
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	AAAATdCAhTWGARRRbYTCARYAR
GC content	33.2%
Information content (bits; total / per base)	26.78 / 1.071
Data sources	ChIP-Seq
Aligned words	901

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (3)	0.963	0.972	0.96	0.97	0.948	0.962	10.483	10.652	523.721	534.155

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF665-like {2.3.3.76} (TFClass)
TFClass ID	TFClass: 2.3.3.76.2
HGNC	HGNC:12948
MGI
EntrezGene (human)	GeneID:90338 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN160_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCG1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN160.H12INVIVO.0.P.C.pcm
PWM	ZN160.H12INVIVO.0.P.C.pwm
PFM	ZN160.H12INVIVO.0.P.C.pfm
Alignment	ZN160.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN160.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN160.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN160.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN160.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN160.H12INVIVO.0.P.C_homer_format_0.001.txt ZN160.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN160.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	853.0	12.0	27.0	9.0
02	819.0	12.0	62.0	8.0
03	882.0	2.0	9.0	8.0
04	784.0	24.0	71.0	22.0
05	20.0	68.0	15.0	798.0
06	279.0	24.0	294.0	304.0
07	26.0	772.0	9.0	94.0
08	818.0	47.0	14.0	22.0
09	326.0	296.0	53.0	226.0
10	25.0	130.0	15.0	731.0
11	546.0	58.0	140.0	157.0
12	112.0	6.0	781.0	2.0
13	881.0	5.0	7.0	8.0
14	341.0	26.0	490.0	44.0
15	585.0	8.0	251.0	57.0
16	119.0	109.0	631.0	42.0
17	80.0	434.0	122.0	265.0
18	117.0	214.0	27.0	543.0
19	13.0	27.0	11.0	850.0
20	27.0	690.0	15.0	169.0
21	873.0	9.0	14.0	5.0
22	702.0	21.0	140.0	38.0
23	66.0	669.0	23.0	143.0
24	829.0	11.0	51.0	10.0
25	347.0	20.0	513.0	21.0

PFM

	A	C	G	T
01	0.947	0.013	0.03	0.01
02	0.909	0.013	0.069	0.009
03	0.979	0.002	0.01	0.009
04	0.87	0.027	0.079	0.024
05	0.022	0.075	0.017	0.886
06	0.31	0.027	0.326	0.337
07	0.029	0.857	0.01	0.104
08	0.908	0.052	0.016	0.024
09	0.362	0.329	0.059	0.251
10	0.028	0.144	0.017	0.811
11	0.606	0.064	0.155	0.174
12	0.124	0.007	0.867	0.002
13	0.978	0.006	0.008	0.009
14	0.378	0.029	0.544	0.049
15	0.649	0.009	0.279	0.063
16	0.132	0.121	0.7	0.047
17	0.089	0.482	0.135	0.294
18	0.13	0.238	0.03	0.603
19	0.014	0.03	0.012	0.943
20	0.03	0.766	0.017	0.188
21	0.969	0.01	0.016	0.006
22	0.779	0.023	0.155	0.042
23	0.073	0.743	0.026	0.159
24	0.92	0.012	0.057	0.011
25	0.385	0.022	0.569	0.023

PWM

	A	C	G	T
01	1.326	-2.807	-2.068	-3.054
02	1.285	-2.807	-1.271	-3.153
03	1.359	-4.116	-3.054	-3.153
04	1.242	-2.178	-1.138	-2.259
05	-2.347	-1.181	-2.609	1.26
06	0.213	-2.178	0.265	0.298
07	-2.103	1.226	-3.054	-0.864
08	1.284	-1.539	-2.671	-2.259
09	0.367	0.271	-1.423	0.003
10	-2.14	-0.544	-2.609	1.172
11	0.881	-1.335	-0.471	-0.358
12	-0.691	-3.383	1.238	-4.116
13	1.358	-3.522	-3.261	-3.153
14	0.412	-2.103	0.773	-1.603
15	0.95	-3.153	0.107	-1.352
16	-0.631	-0.718	1.025	-1.647
17	-1.022	0.652	-0.607	0.161
18	-0.648	-0.051	-2.068	0.876
19	-2.737	-2.068	-2.883	1.323
20	-2.068	1.114	-2.609	-0.285
21	1.349	-3.054	-2.671	-3.522
22	1.132	-2.302	-0.471	-1.743
23	-1.21	1.084	-2.218	-0.45
24	1.298	-2.883	-1.46	-2.965
25	0.429	-2.347	0.819	-2.302

Standard thresholds

P-value	Threshold
0.001	-2.78089
0.0005	-1.21284
0.0001	2.14566