ZN157.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN157.H12INVIVO.0.P.B
Gene (human)	ZNF157 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	30
Consensus	ddShKdKdCnYGRndRSSnhhdYARYvbvv
GC content	51.96%
Information content (bits; total / per base)	14.849 / 0.495
Data sources	ChIP-Seq
Aligned words	462

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.96	0.974	0.953	0.968	0.949	0.967	7.852	8.413	624.244	706.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF25-like {2.3.3.69} (TFClass)
TFClass ID	TFClass: 2.3.3.69.2
HGNC	HGNC:12942
MGI
EntrezGene (human)	GeneID:7712 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN157_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P51786 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN157.H12INVIVO.0.P.B.pcm
PWM	ZN157.H12INVIVO.0.P.B.pwm
PFM	ZN157.H12INVIVO.0.P.B.pfm
Alignment	ZN157.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN157.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN157.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN157.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN157.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN157.H12INVIVO.0.P.B_homer_format_0.001.txt ZN157.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN157.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	80.0	64.0	122.0	196.0
02	79.0	34.0	244.0	105.0
03	36.0	313.0	59.0	54.0
04	136.0	104.0	57.0	165.0
05	22.0	68.0	103.0	269.0
06	83.0	39.0	133.0	207.0
07	4.0	30.0	331.0	97.0
08	106.0	37.0	92.0	227.0
09	17.0	382.0	31.0	32.0
10	177.0	134.0	17.0	134.0
11	25.0	55.0	48.0	334.0
12	25.0	4.0	392.0	41.0
13	90.0	6.0	309.0	57.0
14	59.0	135.0	123.0	145.0
15	236.0	36.0	87.0	103.0
16	122.0	5.0	311.0	24.0
17	20.0	105.0	305.0	32.0
18	26.0	146.0	274.0	16.0
19	105.0	146.0	60.0	151.0
20	160.0	141.0	43.0	118.0
21	189.0	57.0	29.0	187.0
22	80.0	43.0	271.0	68.0
23	4.0	345.0	30.0	83.0
24	402.0	34.0	6.0	20.0
25	202.0	11.0	232.0	17.0
26	50.0	73.0	37.0	302.0
27	239.0	75.0	123.0	25.0
28	36.0	184.0	50.0	192.0
29	257.0	77.0	95.0	33.0
30	86.0	224.0	81.0	71.0

PFM

	A	C	G	T
01	0.173	0.139	0.264	0.424
02	0.171	0.074	0.528	0.227
03	0.078	0.677	0.128	0.117
04	0.294	0.225	0.123	0.357
05	0.048	0.147	0.223	0.582
06	0.18	0.084	0.288	0.448
07	0.009	0.065	0.716	0.21
08	0.229	0.08	0.199	0.491
09	0.037	0.827	0.067	0.069
10	0.383	0.29	0.037	0.29
11	0.054	0.119	0.104	0.723
12	0.054	0.009	0.848	0.089
13	0.195	0.013	0.669	0.123
14	0.128	0.292	0.266	0.314
15	0.511	0.078	0.188	0.223
16	0.264	0.011	0.673	0.052
17	0.043	0.227	0.66	0.069
18	0.056	0.316	0.593	0.035
19	0.227	0.316	0.13	0.327
20	0.346	0.305	0.093	0.255
21	0.409	0.123	0.063	0.405
22	0.173	0.093	0.587	0.147
23	0.009	0.747	0.065	0.18
24	0.87	0.074	0.013	0.043
25	0.437	0.024	0.502	0.037
26	0.108	0.158	0.08	0.654
27	0.517	0.162	0.266	0.054
28	0.078	0.398	0.108	0.416
29	0.556	0.167	0.206	0.071
30	0.186	0.485	0.175	0.154

PWM

	A	C	G	T
01	-0.361	-0.58	0.054	0.523
02	-0.374	-1.192	0.741	-0.094
03	-1.137	0.989	-0.659	-0.745
04	0.161	-0.103	-0.693	0.353
05	-1.604	-0.521	-0.113	0.838
06	-0.325	-1.06	0.139	0.578
07	-3.052	-1.311	1.044	-0.172
08	-0.085	-1.111	-0.224	0.669
09	-1.843	1.187	-1.28	-1.25
10	0.422	0.147	-1.843	0.147
11	-1.484	-0.728	-0.86	1.053
12	-1.484	-3.052	1.213	-1.012
13	-0.246	-2.743	0.976	-0.693
14	-0.659	0.154	0.062	0.225
15	0.708	-1.137	-0.279	-0.113
16	0.054	-2.885	0.982	-1.522
17	-1.693	-0.094	0.963	-1.25
18	-1.447	0.232	0.856	-1.898
19	-0.094	0.232	-0.643	0.265
20	0.322	0.197	-0.966	0.021
21	0.487	-0.693	-1.344	0.477
22	-0.361	-0.966	0.845	-0.521
23	-3.052	1.086	-1.311	-0.325
24	1.238	-1.192	-2.743	-1.693
25	0.553	-2.234	0.691	-1.843
26	-0.82	-0.451	-1.111	0.953
27	0.72	-0.425	0.062	-1.484
28	-1.137	0.461	-0.82	0.503
29	0.793	-0.399	-0.193	-1.221
30	-0.29	0.656	-0.349	-0.478

Standard thresholds

P-value	Threshold
0.001	3.60346
0.0005	4.58681
0.0001	6.67456