ZN154.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN154.H12INVITRO.0.P.D
Gene (human)	ZNF154 (GeneCards)
Gene synonyms (human)	KIAA2003
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	hbvnddddRKvAGACCTMCYGGACdWRRACh
GC content	51.55%
Information content (bits; total / per base)	25.455 / 0.821
Data sources	ChIP-Seq
Aligned words	52

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.918	0.978	0.917	0.974	0.929	0.992	9.403	10.777	113.737	122.387

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.126
HGNC	HGNC:12939
MGI
EntrezGene (human)	GeneID:7710 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN154_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q13106 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN154.H12INVITRO.0.P.D.pcm
PWM	ZN154.H12INVITRO.0.P.D.pwm
PFM	ZN154.H12INVITRO.0.P.D.pfm
Alignment	ZN154.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN154.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN154.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN154.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN154.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN154.H12INVITRO.0.P.D_homer_format_0.001.txt ZN154.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN154.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	15.0	19.0	6.0	12.0
02	6.0	24.0	10.0	12.0
03	28.0	13.0	6.0	5.0
04	9.0	9.0	10.0	24.0
05	7.0	5.0	24.0	16.0
06	10.0	5.0	28.0	9.0
07	10.0	4.0	26.0	12.0
08	24.0	5.0	16.0	7.0
09	8.0	1.0	38.0	5.0
10	3.0	4.0	37.0	8.0
11	35.0	7.0	7.0	3.0
12	42.0	0.0	10.0	0.0
13	3.0	0.0	49.0	0.0
14	46.0	6.0	0.0	0.0
15	0.0	44.0	0.0	8.0
16	4.0	41.0	0.0	7.0
17	2.0	1.0	0.0	49.0
18	9.0	37.0	0.0	6.0
19	1.0	51.0	0.0	0.0
20	2.0	23.0	0.0	27.0
21	23.0	0.0	29.0	0.0
22	4.0	1.0	46.0	1.0
23	41.0	6.0	5.0	0.0
24	4.0	42.0	0.0	6.0
25	23.0	4.0	9.0	16.0
26	38.0	4.0	4.0	6.0
27	39.0	1.0	8.0	4.0
28	9.0	4.0	34.0	5.0
29	46.0	1.0	2.0	3.0
30	3.0	41.0	2.0	6.0
31	9.0	19.0	3.0	21.0

PFM

	A	C	G	T
01	0.288	0.365	0.115	0.231
02	0.115	0.462	0.192	0.231
03	0.538	0.25	0.115	0.096
04	0.173	0.173	0.192	0.462
05	0.135	0.096	0.462	0.308
06	0.192	0.096	0.538	0.173
07	0.192	0.077	0.5	0.231
08	0.462	0.096	0.308	0.135
09	0.154	0.019	0.731	0.096
10	0.058	0.077	0.712	0.154
11	0.673	0.135	0.135	0.058
12	0.808	0.0	0.192	0.0
13	0.058	0.0	0.942	0.0
14	0.885	0.115	0.0	0.0
15	0.0	0.846	0.0	0.154
16	0.077	0.788	0.0	0.135
17	0.038	0.019	0.0	0.942
18	0.173	0.712	0.0	0.115
19	0.019	0.981	0.0	0.0
20	0.038	0.442	0.0	0.519
21	0.442	0.0	0.558	0.0
22	0.077	0.019	0.885	0.019
23	0.788	0.115	0.096	0.0
24	0.077	0.808	0.0	0.115
25	0.442	0.077	0.173	0.308
26	0.731	0.077	0.077	0.115
27	0.75	0.019	0.154	0.077
28	0.173	0.077	0.654	0.096
29	0.885	0.019	0.038	0.058
30	0.058	0.788	0.038	0.115
31	0.173	0.365	0.058	0.404

PWM

	A	C	G	T
01	0.134	0.357	-0.694	-0.074
02	-0.694	0.58	-0.241	-0.074
03	0.729	0.0	-0.694	-0.848
04	-0.337	-0.337	-0.241	0.58
05	-0.56	-0.848	0.58	0.194
06	-0.241	-0.848	0.729	-0.337
07	-0.241	-1.031	0.657	-0.074
08	0.58	-0.848	0.194	-0.56
09	-0.442	-1.951	1.025	-0.848
10	-1.255	-1.031	0.999	-0.442
11	0.945	-0.56	-0.56	-1.255
12	1.123	-2.65	-0.241	-2.65
13	-1.255	-2.65	1.274	-2.65
14	1.212	-0.694	-2.65	-2.65
15	-2.65	1.168	-2.65	-0.442
16	-1.031	1.099	-2.65	-0.56
17	-1.544	-1.951	-2.65	1.274
18	-0.337	0.999	-2.65	-0.694
19	-1.951	1.313	-2.65	-2.65
20	-1.544	0.539	-2.65	0.694
21	0.539	-2.65	0.763	-2.65
22	-1.031	-1.951	1.212	-1.951
23	1.099	-0.694	-0.848	-2.65
24	-1.031	1.123	-2.65	-0.694
25	0.539	-1.031	-0.337	0.194
26	1.025	-1.031	-1.031	-0.694
27	1.05	-1.951	-0.442	-1.031
28	-0.337	-1.031	0.917	-0.848
29	1.212	-1.951	-1.544	-1.255
30	-1.255	1.099	-1.544	-0.694
31	-0.337	0.357	-1.255	0.452

Standard thresholds

P-value	Threshold
0.001	0.97631
0.0005	2.23286
0.0001	4.92011