ZN148.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN148.H12INVITRO.0.P.D
Gene (human)	ZNF148 (GeneCards)
Gene synonyms (human)	ZBP89
Gene (mouse)	Znf148
Gene synonyms (mouse)	Zbp89, Zfp148
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	vvdRnWGGGGGMRGGGvdv
GC content	74.41%
Information content (bits; total / per base)	19.896 / 1.047
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.929	0.952	0.827	0.887	0.97	0.983	5.793	6.132	304.743	411.201

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF148-like {2.3.3.13} (TFClass)
TFClass ID	TFClass: 2.3.3.13.1
HGNC	HGNC:12933
MGI	MGI:1332234
EntrezGene (human)	GeneID:7707 (SSTAR profile)
EntrezGene (mouse)	GeneID:22661 (SSTAR profile)
UniProt ID (human)	ZN148_HUMAN
UniProt ID (mouse)	ZN148_MOUSE
UniProt AC (human)	Q9UQR1 (TFClass)
UniProt AC (mouse)	Q61624 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN148.H12INVITRO.0.P.D.pcm
PWM	ZN148.H12INVITRO.0.P.D.pwm
PFM	ZN148.H12INVITRO.0.P.D.pfm
Alignment	ZN148.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN148.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN148.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN148.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN148.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN148.H12INVITRO.0.P.D_homer_format_0.001.txt ZN148.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN148.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	164.0	224.0	449.0	163.0
02	217.0	160.0	500.0	123.0
03	174.0	124.0	576.0	126.0
04	185.0	91.0	644.0	80.0
05	135.0	130.0	600.0	135.0
06	172.0	52.0	104.0	672.0
07	2.0	0.0	996.0	2.0
08	1.0	0.0	999.0	0.0
09	13.0	1.0	983.0	3.0
10	4.0	0.0	989.0	7.0
11	0.0	1.0	999.0	0.0
12	732.0	138.0	8.0	122.0
13	179.0	0.0	682.0	139.0
14	0.0	1.0	998.0	1.0
15	8.0	5.0	984.0	3.0
16	21.0	8.0	952.0	19.0
17	465.0	282.0	151.0	102.0
18	320.0	93.0	487.0	100.0
19	178.0	210.0	517.0	95.0

PFM

	A	C	G	T
01	0.164	0.224	0.449	0.163
02	0.217	0.16	0.5	0.123
03	0.174	0.124	0.576	0.126
04	0.185	0.091	0.644	0.08
05	0.135	0.13	0.6	0.135
06	0.172	0.052	0.104	0.672
07	0.002	0.0	0.996	0.002
08	0.001	0.0	0.999	0.0
09	0.013	0.001	0.983	0.003
10	0.004	0.0	0.989	0.007
11	0.0	0.001	0.999	0.0
12	0.732	0.138	0.008	0.122
13	0.179	0.0	0.682	0.139
14	0.0	0.001	0.998	0.001
15	0.008	0.005	0.984	0.003
16	0.021	0.008	0.952	0.019
17	0.465	0.282	0.151	0.102
18	0.32	0.093	0.487	0.1
19	0.178	0.21	0.517	0.095

PWM

	A	C	G	T
01	-0.418	-0.109	0.583	-0.424
02	-0.141	-0.442	0.69	-0.702
03	-0.359	-0.694	0.831	-0.678
04	-0.299	-0.999	0.942	-1.125
05	-0.61	-0.648	0.871	-0.61
06	-0.371	-1.544	-0.867	0.984
07	-4.213	-4.982	1.377	-4.213
08	-4.525	-4.982	1.38	-4.982
09	-2.839	-4.525	1.364	-3.975
10	-3.783	-4.982	1.37	-3.362
11	-4.982	-4.525	1.38	-4.982
12	1.07	-0.589	-3.253	-0.71
13	-0.331	-4.982	0.999	-0.582
14	-4.982	-4.525	1.379	-4.525
15	-3.253	-3.622	1.365	-3.975
16	-2.405	-3.253	1.332	-2.497
17	0.617	0.12	-0.5	-0.887
18	0.245	-0.977	0.663	-0.906
19	-0.337	-0.173	0.723	-0.956

Standard thresholds

P-value	Threshold
0.001	-0.81229
0.0005	0.79496
0.0001	4.23581