ZN143.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN143.H12INVIVO.0.P.B
Gene (human)	ZNF143 (GeneCards)
Gene synonyms (human)	SBF, STAF
Gene (mouse)	Znf143
Gene synonyms (mouse)	Staf, Zfp143
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	MvvdGvvYbMTGGGAvdKRKRSK
GC content	55.97%
Information content (bits; total / per base)	17.223 / 0.749
Data sources	ChIP-Seq
Aligned words	1006

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	17 (105)	0.966	0.991	0.944	0.983	0.981	0.997	11.118	12.576	350.854	574.31
Mouse	3 (15)	0.961	0.978	0.943	0.971	0.967	0.982	10.565	11.217	424.959	502.509

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.178	1.607	0.187	0.022

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF76-like {2.3.3.28} (TFClass)
TFClass ID	TFClass: 2.3.3.28.2
HGNC	HGNC:12928
MGI	MGI:1277969
EntrezGene (human)	GeneID:7702 (SSTAR profile)
EntrezGene (mouse)	GeneID:20841 (SSTAR profile)
UniProt ID (human)	ZN143_HUMAN
UniProt ID (mouse)	ZN143_MOUSE
UniProt AC (human)	P52747 (TFClass)
UniProt AC (mouse)	O70230 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	17 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN143.H12INVIVO.0.P.B.pcm
PWM	ZN143.H12INVIVO.0.P.B.pwm
PFM	ZN143.H12INVIVO.0.P.B.pfm
Alignment	ZN143.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN143.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN143.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN143.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN143.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN143.H12INVIVO.0.P.B_homer_format_0.001.txt ZN143.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN143.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	99.0	754.0	68.0	85.0
02	452.0	82.0	392.0	80.0
03	356.0	138.0	409.0	103.0
04	255.0	32.0	516.0	203.0
05	37.0	39.0	898.0	32.0
06	115.0	473.0	359.0	59.0
07	513.0	316.0	89.0	88.0
08	74.0	193.0	143.0	596.0
09	42.0	220.0	435.0	309.0
10	122.0	684.0	117.0	83.0
11	24.0	184.0	17.0	781.0
12	11.0	10.0	974.0	11.0
13	17.0	6.0	974.0	9.0
14	27.0	17.0	950.0	12.0
15	857.0	24.0	51.0	74.0
16	501.0	117.0	314.0	74.0
17	391.0	133.0	168.0	314.0
18	86.0	111.0	126.0	683.0
19	78.0	69.0	793.0	66.0
20	108.0	103.0	159.0	636.0
21	723.0	63.0	165.0	55.0
22	76.0	88.0	773.0	69.0
23	73.0	71.0	134.0	728.0

PFM

	A	C	G	T
01	0.098	0.75	0.068	0.084
02	0.449	0.082	0.39	0.08
03	0.354	0.137	0.407	0.102
04	0.253	0.032	0.513	0.202
05	0.037	0.039	0.893	0.032
06	0.114	0.47	0.357	0.059
07	0.51	0.314	0.088	0.087
08	0.074	0.192	0.142	0.592
09	0.042	0.219	0.432	0.307
10	0.121	0.68	0.116	0.083
11	0.024	0.183	0.017	0.776
12	0.011	0.01	0.968	0.011
13	0.017	0.006	0.968	0.009
14	0.027	0.017	0.944	0.012
15	0.852	0.024	0.051	0.074
16	0.498	0.116	0.312	0.074
17	0.389	0.132	0.167	0.312
18	0.085	0.11	0.125	0.679
19	0.078	0.069	0.788	0.066
20	0.107	0.102	0.158	0.632
21	0.719	0.063	0.164	0.055
22	0.076	0.087	0.768	0.069
23	0.073	0.071	0.133	0.724

PWM

	A	C	G	T
01	-0.922	1.093	-1.29	-1.072
02	0.583	-1.107	0.441	-1.131
03	0.345	-0.595	0.484	-0.883
04	0.014	-2.016	0.715	-0.213
05	-1.878	-1.827	1.268	-2.016
06	-0.774	0.628	0.354	-1.428
07	0.709	0.227	-1.026	-1.038
08	-1.207	-0.263	-0.559	0.859
09	-1.756	-0.133	0.545	0.205
10	-0.716	0.996	-0.757	-1.095
11	-2.287	-0.31	-2.604	1.128
12	-2.99	-3.072	1.349	-2.99
13	-2.604	-3.489	1.349	-3.161
14	-2.176	-2.604	1.324	-2.915
15	1.221	-2.287	-1.569	-1.207
16	0.686	-0.757	0.221	-1.207
17	0.439	-0.631	-0.4	0.221
18	-1.06	-0.809	-0.684	0.995
19	-1.156	-1.275	1.144	-1.319
20	-0.836	-0.883	-0.455	0.924
21	1.052	-1.364	-0.418	-1.496
22	-1.181	-1.038	1.118	-1.275
23	-1.22	-1.248	-0.624	1.058

Standard thresholds

P-value	Threshold
0.001	2.58856
0.0005	3.71411
0.0001	6.10676