ZN143.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN143.H12INVITRO.0.P.D
Gene (human)	ZNF143 (GeneCards)
Gene synonyms (human)	SBF, STAF
Gene (mouse)	Znf143
Gene synonyms (mouse)	Staf, Zfp143
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YdvdGSMYbMTGGGAdWTGTAGT
GC content	52.22%
Information content (bits; total / per base)	24.67 / 1.073
Data sources	ChIP-Seq
Aligned words	889

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	17 (105)	0.944	0.987	0.925	0.98	0.961	0.994	12.034	13.62	338.328	567.229
Mouse	3 (15)	0.939	0.96	0.923	0.954	0.945	0.965	11.636	12.417	397.77	478.208

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.061	2.69	0.191	0.032

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF76-like {2.3.3.28} (TFClass)
TFClass ID	TFClass: 2.3.3.28.2
HGNC	HGNC:12928
MGI	MGI:1277969
EntrezGene (human)	GeneID:7702 (SSTAR profile)
EntrezGene (mouse)	GeneID:20841 (SSTAR profile)
UniProt ID (human)	ZN143_HUMAN
UniProt ID (mouse)	ZN143_MOUSE
UniProt AC (human)	P52747 (TFClass)
UniProt AC (mouse)	O70230 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	17 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN143.H12INVITRO.0.P.D.pcm
PWM	ZN143.H12INVITRO.0.P.D.pwm
PFM	ZN143.H12INVITRO.0.P.D.pfm
Alignment	ZN143.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN143.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN143.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN143.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN143.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN143.H12INVITRO.0.P.D_homer_format_0.001.txt ZN143.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN143.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	71.0	654.0	34.0	130.0
02	325.0	58.0	405.0	101.0
03	285.0	165.0	320.0	119.0
04	218.0	30.0	357.0	284.0
05	28.0	20.0	822.0	19.0
06	92.0	584.0	166.0	47.0
07	438.0	334.0	30.0	87.0
08	20.0	183.0	38.0	648.0
09	33.0	171.0	326.0	359.0
10	102.0	642.0	70.0	75.0
11	4.0	124.0	2.0	759.0
12	7.0	0.0	882.0	0.0
13	1.0	2.0	886.0	0.0
14	28.0	2.0	849.0	10.0
15	798.0	13.0	35.0	43.0
16	413.0	100.0	272.0	104.0
17	297.0	63.0	70.0	459.0
18	17.0	72.0	30.0	770.0
19	12.0	2.0	869.0	6.0
20	35.0	18.0	36.0	800.0
21	848.0	5.0	32.0	4.0
22	5.0	8.0	874.0	2.0
23	9.0	6.0	17.0	857.0

PFM

	A	C	G	T
01	0.08	0.736	0.038	0.146
02	0.366	0.065	0.456	0.114
03	0.321	0.186	0.36	0.134
04	0.245	0.034	0.402	0.319
05	0.031	0.022	0.925	0.021
06	0.103	0.657	0.187	0.053
07	0.493	0.376	0.034	0.098
08	0.022	0.206	0.043	0.729
09	0.037	0.192	0.367	0.404
10	0.115	0.722	0.079	0.084
11	0.004	0.139	0.002	0.854
12	0.008	0.0	0.992	0.0
13	0.001	0.002	0.997	0.0
14	0.031	0.002	0.955	0.011
15	0.898	0.015	0.039	0.048
16	0.465	0.112	0.306	0.117
17	0.334	0.071	0.079	0.516
18	0.019	0.081	0.034	0.866
19	0.013	0.002	0.978	0.007
20	0.039	0.02	0.04	0.9
21	0.954	0.006	0.036	0.004
22	0.006	0.009	0.983	0.002
23	0.01	0.007	0.019	0.964

PWM

	A	C	G	T
01	-1.125	1.074	-1.836	-0.531
02	0.378	-1.322	0.597	-0.78
03	0.247	-0.295	0.362	-0.618
04	-0.019	-1.955	0.471	0.244
05	-2.02	-2.334	1.302	-2.381
06	-0.871	0.961	-0.289	-1.526
07	0.675	0.405	-1.955	-0.926
08	-2.334	-0.193	-1.73	1.065
09	-1.865	-0.26	0.381	0.477
10	-0.77	1.056	-1.139	-1.072
11	-3.671	-0.578	-4.104	1.223
12	-3.248	-4.882	1.373	-4.882
13	-4.419	-4.104	1.377	-4.882
14	-2.02	-4.104	1.335	-2.952
15	1.273	-2.724	-1.809	-1.611
16	0.616	-0.789	0.201	-0.751
17	0.288	-1.242	-1.139	0.721
18	-2.483	-1.111	-1.955	1.237
19	-2.794	-4.104	1.358	-3.371
20	-1.809	-2.431	-1.782	1.275
21	1.333	-3.51	-1.894	-3.671
22	-3.51	-3.14	1.364	-4.104
23	-3.041	-3.371	-2.483	1.344

Standard thresholds

P-value	Threshold
0.001	-2.37799
0.0005	-0.77434
0.0001	2.64366