ZN141.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN141.H12INVIVO.0.P.C
Gene (human)	ZNF141 (GeneCards)
Gene synonyms (human)	D4S90
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	17
Consensus	dRGGGGMCGCYCYYvYY
GC content	75.89%
Information content (bits; total / per base)	17.358 / 1.021
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.976	0.981	0.945	0.959	0.975	0.979	5.852	5.885	826.491	895.215

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.110
HGNC	HGNC:12926
MGI
EntrezGene (human)	GeneID:7700 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN141_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15928 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN141.H12INVIVO.0.P.C.pcm
PWM	ZN141.H12INVIVO.0.P.C.pwm
PFM	ZN141.H12INVIVO.0.P.C.pfm
Alignment	ZN141.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN141.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN141.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN141.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN141.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN141.H12INVIVO.0.P.C_homer_format_0.001.txt ZN141.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN141.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	199.0	80.0	443.0	278.0
02	114.0	44.0	779.0	63.0
03	38.0	3.0	959.0	0.0
04	4.0	4.0	716.0	276.0
05	3.0	1.0	890.0	106.0
06	8.0	62.0	920.0	10.0
07	658.0	204.0	130.0	8.0
08	1.0	977.0	2.0	20.0
09	264.0	2.0	727.0	7.0
10	5.0	970.0	11.0	14.0
11	134.0	567.0	7.0	292.0
12	28.0	902.0	3.0	67.0
13	25.0	737.0	55.0	183.0
14	56.0	732.0	72.0	140.0
15	430.0	359.0	111.0	100.0
16	96.0	682.0	109.0	113.0
17	98.0	605.0	37.0	260.0

PFM

	A	C	G	T
01	0.199	0.08	0.443	0.278
02	0.114	0.044	0.779	0.063
03	0.038	0.003	0.959	0.0
04	0.004	0.004	0.716	0.276
05	0.003	0.001	0.89	0.106
06	0.008	0.062	0.92	0.01
07	0.658	0.204	0.13	0.008
08	0.001	0.977	0.002	0.02
09	0.264	0.002	0.727	0.007
10	0.005	0.97	0.011	0.014
11	0.134	0.567	0.007	0.292
12	0.028	0.902	0.003	0.067
13	0.025	0.737	0.055	0.183
14	0.056	0.732	0.072	0.14
15	0.43	0.359	0.111	0.1
16	0.096	0.682	0.109	0.113
17	0.098	0.605	0.037	0.26

PWM

	A	C	G	T
01	-0.226	-1.125	0.569	0.105
02	-0.777	-1.706	1.132	-1.358
03	-1.846	-3.975	1.339	-4.982
04	-3.783	-3.783	1.048	0.098
05	-3.975	-4.525	1.265	-0.849
06	-3.253	-1.374	1.298	-3.066
07	0.963	-0.202	-0.648	-3.253
08	-4.525	1.358	-4.213	-2.45
09	0.054	-4.213	1.063	-3.362
10	-3.622	1.351	-2.985	-2.773
11	-0.618	0.815	-3.362	0.154
12	-2.136	1.278	-3.975	-1.298
13	-2.243	1.077	-1.49	-0.309
14	-1.473	1.07	-1.228	-0.574
15	0.539	0.36	-0.803	-0.906
16	-0.946	0.999	-0.821	-0.786
17	-0.926	0.88	-1.872	0.039

Standard thresholds

P-value	Threshold
0.001	1.82381
0.0005	3.13081
0.0001	5.86381