MotifZN140.H12INVIVO.0.P.B
Gene (human)ZNF140
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length23
ConsensushhbhWRCAATTCYRCTCMhhvvb
GC content51.15%
Information content (bits; total / per base)18.765 / 0.816
Data sourcesChIP-Seq
Aligned words1013

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (11) 0.823 0.906 0.766 0.887 0.852 0.926 6.846 10.49 179.174 393.553

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.642 0.671 0.55 0.58 0.519 0.542
best 0.667 0.702 0.555 0.593 0.521 0.548
Methyl HT-SELEX, 1 experiments median 0.667 0.702 0.555 0.593 0.517 0.548
best 0.667 0.702 0.555 0.593 0.517 0.548
Non-Methyl HT-SELEX, 1 experiments median 0.617 0.639 0.545 0.566 0.521 0.536
best 0.617 0.639 0.545 0.566 0.521 0.536
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF302-like {2.3.3.44} (TFClass)
TFClass IDTFClass: 2.3.3.44.4
HGNCHGNC:12925
MGI
EntrezGene (human)GeneID:7699
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN140_HUMAN
UniProt ID (mouse)
UniProt AC (human)P52738
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01522.0182.0151.0158.0
02118.0529.0107.0259.0
03107.0589.0123.0194.0
04123.0604.097.0189.0
05658.068.074.0213.0
06117.043.0777.076.0
0714.0952.014.033.0
08827.085.035.066.0
09877.055.059.022.0
109.060.011.0933.0
118.017.09.0979.0
1237.0942.025.09.0
1384.0698.03.0228.0
14451.034.0517.011.0
1520.0875.055.063.0
1611.0118.012.0872.0
178.0943.05.057.0
18171.0688.028.0126.0
19178.0199.085.0551.0
20458.0171.0170.0214.0
21161.0214.0491.0147.0
22209.0222.0410.0172.0
23131.0229.0142.0511.0
PFM
ACGT
010.5150.180.1490.156
020.1160.5220.1060.256
030.1060.5810.1210.192
040.1210.5960.0960.187
050.650.0670.0730.21
060.1150.0420.7670.075
070.0140.940.0140.033
080.8160.0840.0350.065
090.8660.0540.0580.022
100.0090.0590.0110.921
110.0080.0170.0090.966
120.0370.930.0250.009
130.0830.6890.0030.225
140.4450.0340.510.011
150.020.8640.0540.062
160.0110.1160.0120.861
170.0080.9310.0050.056
180.1690.6790.0280.124
190.1760.1960.0840.544
200.4520.1690.1680.211
210.1590.2110.4850.145
220.2060.2190.4050.17
230.1290.2260.140.504
PWM
ACGT
010.72-0.328-0.513-0.468
02-0.7560.733-0.8520.022
03-0.8520.84-0.715-0.264
04-0.7150.865-0.949-0.29
050.951-1.297-1.214-0.172
06-0.764-1.7411.116-1.188
07-2.7861.319-2.786-1.994
081.179-1.078-1.938-1.326
091.237-1.503-1.435-2.374
10-3.168-1.418-2.9971.299
11-3.266-2.611-3.1681.347
12-1.8851.309-2.255-3.168
13-1.091.01-3.987-0.104
140.574-1.9650.71-2.997
15-2.4621.235-1.503-1.371
16-2.997-0.756-2.9221.232
17-3.2661.31-3.635-1.468
18-0.3890.995-2.149-0.691
19-0.35-0.239-1.0780.774
200.589-0.389-0.395-0.167
21-0.449-0.1670.659-0.539
22-0.191-0.1310.479-0.384
23-0.653-0.1-0.5730.699
Standard thresholds
P-value Threshold
0.001 1.75501
0.0005 2.98406
0.0001 5.59576