MotifZN140.H12CORE.1.SM.B
Gene (human)ZNF140
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length15
ConsensusnhRCAATTCCGCTCn
GC content52.09%
Information content (bits; total / per base)19.159 / 1.277
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words1155

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (11) 0.726 0.907 0.702 0.896 0.722 0.905 4.234 6.584 154.347 413.114

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.735 0.758 0.598 0.629 0.543 0.571
best 0.784 0.809 0.614 0.653 0.546 0.583
Methyl HT-SELEX, 1 experiments median 0.784 0.809 0.614 0.653 0.546 0.583
best 0.784 0.809 0.614 0.653 0.546 0.583
Non-Methyl HT-SELEX, 1 experiments median 0.686 0.708 0.582 0.605 0.541 0.56
best 0.686 0.708 0.582 0.605 0.541 0.56
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF302-like {2.3.3.44} (TFClass)
TFClass IDTFClass: 2.3.3.44.4
HGNCHGNC:12925
MGI
EntrezGene (human)GeneID:7699
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN140_HUMAN
UniProt ID (mouse)
UniProt AC (human)P52738
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01231.0321.0237.0366.0
02484.75189.75104.75375.75
03364.058.0716.017.0
048.01134.08.05.0
051088.019.07.041.0
061127.013.014.01.0
070.02.00.01153.0
080.01.00.01154.0
094.01147.01.03.0
104.01134.01.016.0
1128.048.01068.011.0
1243.01045.06.061.0
1327.090.088.0950.0
1452.75966.7549.7585.75
15391.5348.5206.5208.5
PFM
ACGT
010.20.2780.2050.317
020.420.1640.0910.325
030.3150.050.620.015
040.0070.9820.0070.004
050.9420.0160.0060.035
060.9760.0110.0120.001
070.00.0020.00.998
080.00.0010.00.999
090.0030.9930.0010.003
100.0030.9820.0010.014
110.0240.0420.9250.01
120.0370.9050.0050.053
130.0230.0780.0760.823
140.0460.8370.0430.074
150.3390.3020.1790.181
PWM
ACGT
01-0.2220.105-0.1960.236
020.516-0.417-1.0030.262
030.23-1.5810.904-2.74
04-3.3931.363-3.393-3.76
051.322-2.638-3.501-1.916
061.357-2.98-2.914-4.655
07-5.105-4.346-5.1051.38
08-5.105-4.655-5.1051.381
09-3.921.375-4.655-4.111
10-3.921.363-4.655-2.795
11-2.278-1.7641.304-3.125
12-1.871.282-3.622-1.532
13-2.313-1.152-1.1741.187
14-1.6731.204-1.73-1.2
150.3030.187-0.333-0.323
Standard thresholds
P-value Threshold
0.001 -0.06749
0.0005 1.45786
0.0001 4.67931