ZN136.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN136.H12INVIVO.0.P.B
Gene (human)	ZNF136 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	TTTRCTGRRTAYARdATTCTWGG
GC content	37.47%
Information content (bits; total / per base)	27.175 / 1.182
Data sources	ChIP-Seq
Aligned words	698

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (7)	0.818	0.994	0.83	0.993	0.793	0.995	9.905	14.505	153.469	811.137

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.15
HGNC	HGNC:12920
MGI
EntrezGene (human)	GeneID:7695 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN136_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52737 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN136.H12INVIVO.0.P.B.pcm
PWM	ZN136.H12INVIVO.0.P.B.pwm
PFM	ZN136.H12INVIVO.0.P.B.pfm
Alignment	ZN136.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN136.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN136.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN136.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN136.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN136.H12INVIVO.0.P.B_homer_format_0.001.txt ZN136.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN136.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	41.0	55.0	33.0	569.0
02	16.0	23.0	9.0	650.0
03	15.0	68.0	24.0	591.0
04	97.0	20.0	524.0	57.0
05	21.0	584.0	17.0	76.0
06	15.0	29.0	3.0	651.0
07	62.0	3.0	604.0	29.0
08	87.0	27.0	554.0	30.0
09	381.0	16.0	277.0	24.0
10	6.0	78.0	12.0	602.0
11	635.0	11.0	33.0	19.0
12	46.0	192.0	15.0	445.0
13	652.0	4.0	37.0	5.0
14	128.0	28.0	530.0	12.0
15	307.0	35.0	49.0	307.0
16	661.0	12.0	24.0	1.0
17	15.0	21.0	12.0	650.0
18	16.0	27.0	21.0	634.0
19	17.0	587.0	9.0	85.0
20	21.0	38.0	15.0	624.0
21	102.0	33.0	91.0	472.0
22	88.0	5.0	567.0	38.0
23	28.0	8.0	652.0	10.0

PFM

	A	C	G	T
01	0.059	0.079	0.047	0.815
02	0.023	0.033	0.013	0.931
03	0.021	0.097	0.034	0.847
04	0.139	0.029	0.751	0.082
05	0.03	0.837	0.024	0.109
06	0.021	0.042	0.004	0.933
07	0.089	0.004	0.865	0.042
08	0.125	0.039	0.794	0.043
09	0.546	0.023	0.397	0.034
10	0.009	0.112	0.017	0.862
11	0.91	0.016	0.047	0.027
12	0.066	0.275	0.021	0.638
13	0.934	0.006	0.053	0.007
14	0.183	0.04	0.759	0.017
15	0.44	0.05	0.07	0.44
16	0.947	0.017	0.034	0.001
17	0.021	0.03	0.017	0.931
18	0.023	0.039	0.03	0.908
19	0.024	0.841	0.013	0.122
20	0.03	0.054	0.021	0.894
21	0.146	0.047	0.13	0.676
22	0.126	0.007	0.812	0.054
23	0.04	0.011	0.934	0.014

PWM

	A	C	G	T
01	-1.419	-1.135	-1.626	1.175
02	-2.301	-1.967	-2.807	1.308
03	-2.36	-0.928	-1.927	1.213
04	-0.58	-2.097	1.093	-1.1
05	-2.052	1.201	-2.246	-0.819
06	-2.36	-1.749	-3.637	1.31
07	-1.018	-3.637	1.235	-1.749
08	-0.687	-1.817	1.149	-1.717
09	0.776	-2.301	0.459	-1.927
10	-3.138	-0.794	-2.558	1.232
11	1.285	-2.635	-1.626	-2.144
12	-1.308	0.095	-2.36	0.93
13	1.311	-3.442	-1.517	-3.279
14	-0.307	-1.782	1.105	-2.558
15	0.561	-1.57	-1.247	0.561
16	1.325	-2.558	-1.927	-4.202
17	-2.36	-2.052	-2.558	1.308
18	-2.301	-1.817	-2.052	1.283
19	-2.246	1.207	-2.807	-0.71
20	-2.052	-1.491	-2.36	1.268
21	-0.53	-1.626	-0.643	0.989
22	-0.675	-3.279	1.172	-1.491
23	-1.782	-2.906	1.311	-2.717

Standard thresholds

P-value	Threshold
0.001	-2.27844
0.0005	-0.77964
0.0001	2.43846