MotifZN135.H12INVIVO.0.P.C
Gene (human)ZNF135
(GeneCards)
Gene synonyms (human)ZNF61, ZNF78L1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusRGYCTYRACCTCCYRRGCTCAAG
GC content58.69%
Information content (bits; total / per base)26.722 / 1.162
Data sourcesChIP-Seq
Aligned words910

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.83 0.838 0.808 0.813 0.874 0.887 13.885 14.062 336.308 417.367
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.202
HGNCHGNC:12919
MGI
EntrezGene (human)GeneID:7694
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN135_HUMAN
UniProt ID (mouse)
UniProt AC (human)P52742
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01655.029.0173.053.0
02103.033.0751.023.0
0346.0511.0119.0234.0
0417.0832.014.047.0
0530.029.011.0840.0
0636.0653.030.0191.0
07127.059.0699.025.0
08816.026.053.015.0
0981.0748.052.029.0
1015.0852.09.034.0
1125.018.05.0862.0
1219.0856.017.018.0
1338.0702.06.0164.0
1459.0240.044.0567.0
15226.024.0592.068.0
16454.08.0427.021.0
1727.062.0803.018.0
1811.0804.040.055.0
1917.034.012.0847.0
2016.0789.038.067.0
21728.042.0122.018.0
22822.09.050.029.0
2337.020.0836.017.0
PFM
ACGT
010.720.0320.190.058
020.1130.0360.8250.025
030.0510.5620.1310.257
040.0190.9140.0150.052
050.0330.0320.0120.923
060.040.7180.0330.21
070.140.0650.7680.027
080.8970.0290.0580.016
090.0890.8220.0570.032
100.0160.9360.010.037
110.0270.020.0050.947
120.0210.9410.0190.02
130.0420.7710.0070.18
140.0650.2640.0480.623
150.2480.0260.6510.075
160.4990.0090.4690.023
170.030.0680.8820.02
180.0120.8840.0440.06
190.0190.0370.0130.931
200.0180.8670.0420.074
210.80.0460.1340.02
220.9030.010.0550.032
230.0410.0220.9190.019
PWM
ACGT
011.053-2.01-0.272-1.433
02-0.783-1.8881.189-2.228
03-1.570.805-0.6410.028
04-2.5061.291-2.681-1.549
05-1.978-2.01-2.8931.301
06-1.8051.05-1.978-0.173
07-0.577-1.3291.117-2.15
081.272-2.113-1.433-2.619
09-1.0191.185-1.451-2.01
10-2.6191.315-3.064-1.859
11-2.15-2.454-3.5321.327
12-2.4041.32-2.506-2.454
13-1.7531.122-3.393-0.324
14-1.3290.053-1.6120.909
15-0.007-2.1880.952-1.19
160.687-3.1620.626-2.312
17-2.078-1.281.256-2.454
18-2.8931.257-1.704-1.397
19-2.506-1.859-2.8171.309
20-2.5611.238-1.753-1.205
211.158-1.657-0.617-2.454
221.279-3.064-1.489-2.01
23-1.779-2.3571.296-2.506
Standard thresholds
P-value Threshold
0.001 -2.02139
0.0005 -0.54599
0.0001 2.62496