ZN135.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN135.H12INVIVO.0.P.C
Gene (human)	ZNF135 (GeneCards)
Gene synonyms (human)	ZNF61, ZNF78L1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	RGYCTYRACCTCCYRRGCTCAAG
GC content	58.69%
Information content (bits; total / per base)	26.722 / 1.162
Data sources	ChIP-Seq
Aligned words	910

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.83	0.838	0.808	0.813	0.874	0.887	13.885	14.062	336.308	417.367

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.202
HGNC	HGNC:12919
MGI
EntrezGene (human)	GeneID:7694 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN135_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52742 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN135.H12INVIVO.0.P.C.pcm
PWM	ZN135.H12INVIVO.0.P.C.pwm
PFM	ZN135.H12INVIVO.0.P.C.pfm
Alignment	ZN135.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN135.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN135.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN135.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN135.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN135.H12INVIVO.0.P.C_homer_format_0.001.txt ZN135.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN135.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	655.0	29.0	173.0	53.0
02	103.0	33.0	751.0	23.0
03	46.0	511.0	119.0	234.0
04	17.0	832.0	14.0	47.0
05	30.0	29.0	11.0	840.0
06	36.0	653.0	30.0	191.0
07	127.0	59.0	699.0	25.0
08	816.0	26.0	53.0	15.0
09	81.0	748.0	52.0	29.0
10	15.0	852.0	9.0	34.0
11	25.0	18.0	5.0	862.0
12	19.0	856.0	17.0	18.0
13	38.0	702.0	6.0	164.0
14	59.0	240.0	44.0	567.0
15	226.0	24.0	592.0	68.0
16	454.0	8.0	427.0	21.0
17	27.0	62.0	803.0	18.0
18	11.0	804.0	40.0	55.0
19	17.0	34.0	12.0	847.0
20	16.0	789.0	38.0	67.0
21	728.0	42.0	122.0	18.0
22	822.0	9.0	50.0	29.0
23	37.0	20.0	836.0	17.0

PFM

	A	C	G	T
01	0.72	0.032	0.19	0.058
02	0.113	0.036	0.825	0.025
03	0.051	0.562	0.131	0.257
04	0.019	0.914	0.015	0.052
05	0.033	0.032	0.012	0.923
06	0.04	0.718	0.033	0.21
07	0.14	0.065	0.768	0.027
08	0.897	0.029	0.058	0.016
09	0.089	0.822	0.057	0.032
10	0.016	0.936	0.01	0.037
11	0.027	0.02	0.005	0.947
12	0.021	0.941	0.019	0.02
13	0.042	0.771	0.007	0.18
14	0.065	0.264	0.048	0.623
15	0.248	0.026	0.651	0.075
16	0.499	0.009	0.469	0.023
17	0.03	0.068	0.882	0.02
18	0.012	0.884	0.044	0.06
19	0.019	0.037	0.013	0.931
20	0.018	0.867	0.042	0.074
21	0.8	0.046	0.134	0.02
22	0.903	0.01	0.055	0.032
23	0.041	0.022	0.919	0.019

PWM

	A	C	G	T
01	1.053	-2.01	-0.272	-1.433
02	-0.783	-1.888	1.189	-2.228
03	-1.57	0.805	-0.641	0.028
04	-2.506	1.291	-2.681	-1.549
05	-1.978	-2.01	-2.893	1.301
06	-1.805	1.05	-1.978	-0.173
07	-0.577	-1.329	1.117	-2.15
08	1.272	-2.113	-1.433	-2.619
09	-1.019	1.185	-1.451	-2.01
10	-2.619	1.315	-3.064	-1.859
11	-2.15	-2.454	-3.532	1.327
12	-2.404	1.32	-2.506	-2.454
13	-1.753	1.122	-3.393	-0.324
14	-1.329	0.053	-1.612	0.909
15	-0.007	-2.188	0.952	-1.19
16	0.687	-3.162	0.626	-2.312
17	-2.078	-1.28	1.256	-2.454
18	-2.893	1.257	-1.704	-1.397
19	-2.506	-1.859	-2.817	1.309
20	-2.561	1.238	-1.753	-1.205
21	1.158	-1.657	-0.617	-2.454
22	1.279	-3.064	-1.489	-2.01
23	-1.779	-2.357	1.296	-2.506

Standard thresholds

P-value	Threshold
0.001	-2.02139
0.0005	-0.54599
0.0001	2.62496