ZN134.H12RSNP.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN134.H12RSNP.1.P.D
Gene (human)	ZNF134 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	22
Consensus	KhvdbvhYYMAKCAGKKGMdGS
GC content	52.61%
Information content (bits; total / per base)	15.705 / 0.714
Data sources	ChIP-Seq
Aligned words	500

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.903	0.929	0.869	0.901	0.887	0.912	7.487	8.107	457.377	512.481

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.1
HGNC	HGNC:12918
MGI
EntrezGene (human)	GeneID:7693 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN134_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52741 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN134.H12RSNP.1.P.D.pcm
PWM	ZN134.H12RSNP.1.P.D.pwm
PFM	ZN134.H12RSNP.1.P.D.pfm
Alignment	ZN134.H12RSNP.1.P.D.words.tsv
Threshold to P-value map	ZN134.H12RSNP.1.P.D.thr
Motif in other formats
JASPAR format	ZN134.H12RSNP.1.P.D_jaspar_format.txt
MEME format	ZN134.H12RSNP.1.P.D_meme_format.meme
Transfac format	ZN134.H12RSNP.1.P.D_transfac_format.txt
Homer format	ZN134.H12RSNP.1.P.D_homer_format_0.001.txt ZN134.H12RSNP.1.P.D_homer_format_0.0005.txt ZN134.H12RSNP.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	48.0	62.0	321.0	69.0
02	82.0	281.0	62.0	75.0
03	111.0	263.0	78.0	48.0
04	79.0	56.0	75.0	290.0
05	72.0	179.0	160.0	89.0
06	198.25	89.25	148.25	64.25
07	119.25	194.25	49.25	137.25
08	75.25	301.25	41.25	82.25
09	24.25	144.25	23.25	308.25
10	260.25	172.25	34.25	33.25
11	466.25	5.25	22.25	6.25
12	6.25	14.25	111.25	368.25
13	4.25	465.25	15.25	15.25
14	471.25	6.25	17.25	5.25
15	5.25	3.25	451.25	40.25
16	24.25	42.25	214.25	219.25
17	28.25	38.25	94.25	339.25
18	66.25	5.25	410.25	18.25
19	363.25	101.25	28.25	7.25
20	257.25	53.25	69.25	120.25
21	18.25	40.25	425.25	16.25
22	56.25	66.25	353.25	24.25

PFM

	A	C	G	T
01	0.096	0.124	0.642	0.138
02	0.164	0.562	0.124	0.15
03	0.222	0.526	0.156	0.096
04	0.158	0.112	0.15	0.58
05	0.144	0.358	0.32	0.178
06	0.397	0.179	0.297	0.129
07	0.239	0.389	0.099	0.275
08	0.151	0.602	0.083	0.165
09	0.049	0.289	0.047	0.616
10	0.521	0.345	0.069	0.067
11	0.933	0.011	0.045	0.013
12	0.013	0.029	0.223	0.737
13	0.009	0.931	0.031	0.031
14	0.943	0.013	0.035	0.011
15	0.011	0.007	0.903	0.081
16	0.049	0.085	0.429	0.439
17	0.057	0.077	0.189	0.679
18	0.133	0.011	0.821	0.037
19	0.727	0.203	0.057	0.015
20	0.515	0.107	0.139	0.241
21	0.037	0.081	0.851	0.033
22	0.113	0.133	0.707	0.049

PWM

	A	C	G	T
01	-0.938	-0.689	0.936	-0.584
02	-0.415	0.803	-0.689	-0.503
03	-0.117	0.737	-0.464	-0.938
04	-0.452	-0.788	-0.503	0.835
05	-0.543	0.355	0.244	-0.335
06	0.457	-0.332	0.169	-0.654
07	-0.046	0.436	-0.913	0.092
08	-0.499	0.872	-1.084	-0.412
09	-1.59	0.142	-1.63	0.895
10	0.727	0.317	-1.263	-1.291
11	1.307	-2.923	-1.671	-2.786
12	-2.786	-2.08	-0.115	1.072
13	-3.082	1.305	-2.019	-2.019
14	1.318	-2.786	-1.907	-2.923
15	-2.923	-3.271	1.275	-1.108
16	-1.59	-1.061	0.534	0.557
17	-1.446	-1.157	-0.278	0.991
18	-0.624	-2.923	1.18	-1.855
19	1.059	-0.208	-1.446	-2.665
20	0.715	-0.837	-0.581	-0.038
21	-1.855	-1.108	1.216	-1.961
22	-0.784	-0.624	1.031	-1.59

Standard thresholds

P-value	Threshold
0.001	3.17741
0.0005	4.24341
0.0001	6.50051