ZN134.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN134.H12INVITRO.0.P.D
Gene (human)	ZNF134 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	vhYYhAKCAGKKGMdGS
GC content	50.57%
Information content (bits; total / per base)	15.046 / 0.885
Data sources	ChIP-Seq
Aligned words	1065

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.916	0.94	0.894	0.919	0.894	0.92	6.178	6.612	482.215	534.347

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.1
HGNC	HGNC:12918
MGI
EntrezGene (human)	GeneID:7693 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN134_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52741 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN134.H12INVITRO.0.P.D.pcm
PWM	ZN134.H12INVITRO.0.P.D.pwm
PFM	ZN134.H12INVITRO.0.P.D.pfm
Alignment	ZN134.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN134.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN134.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN134.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN134.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN134.H12INVITRO.0.P.D_homer_format_0.001.txt ZN134.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN134.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	464.0	204.0	231.0	166.0
02	199.0	437.0	110.0	319.0
03	77.0	698.0	82.0	208.0
04	31.0	307.0	68.0	659.0
05	542.0	358.0	79.0	86.0
06	1019.0	10.0	22.0	14.0
07	14.0	52.0	251.0	748.0
08	15.0	968.0	8.0	74.0
09	992.0	40.0	17.0	16.0
10	4.0	7.0	1052.0	2.0
11	78.0	32.0	477.0	478.0
12	54.0	85.0	153.0	773.0
13	37.0	10.0	998.0	20.0
14	784.0	221.0	48.0	12.0
15	551.0	133.0	171.0	210.0
16	48.0	74.0	884.0	59.0
17	116.0	154.0	714.0	81.0

PFM

	A	C	G	T
01	0.436	0.192	0.217	0.156
02	0.187	0.41	0.103	0.3
03	0.072	0.655	0.077	0.195
04	0.029	0.288	0.064	0.619
05	0.509	0.336	0.074	0.081
06	0.957	0.009	0.021	0.013
07	0.013	0.049	0.236	0.702
08	0.014	0.909	0.008	0.069
09	0.931	0.038	0.016	0.015
10	0.004	0.007	0.988	0.002
11	0.073	0.03	0.448	0.449
12	0.051	0.08	0.144	0.726
13	0.035	0.009	0.937	0.019
14	0.736	0.208	0.045	0.011
15	0.517	0.125	0.161	0.197
16	0.045	0.069	0.83	0.055
17	0.109	0.145	0.67	0.076

PWM

	A	C	G	T
01	0.553	-0.264	-0.141	-0.469
02	-0.289	0.493	-0.875	0.18
03	-1.225	0.96	-1.163	-0.245
04	-2.102	0.142	-1.346	0.902
05	0.708	0.294	-1.2	-1.117
06	1.337	-3.128	-2.424	-2.835
07	-2.835	-1.607	-0.059	1.029
08	-2.773	1.286	-3.314	-1.264
09	1.311	-1.859	-2.66	-2.715
10	-3.843	-3.423	1.369	-4.271
11	-1.212	-2.072	0.58	0.582
12	-1.57	-1.128	-0.549	1.062
13	-1.934	-3.128	1.317	-2.512
14	1.076	-0.185	-1.684	-2.97
15	0.724	-0.688	-0.439	-0.236
16	-1.684	-1.264	1.195	-1.484
17	-0.822	-0.543	0.982	-1.175

Standard thresholds

P-value	Threshold
0.001	3.13846
0.0005	4.24926
0.0001	6.58101