ZN133.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN133.H12RSNP.0.P.D
Gene (human)	ZNF133 (GeneCards)
Gene synonyms (human)	ZNF150
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	dRdRRhMYAAYWhMbRYRWAAKWGR
GC content	39.81%
Information content (bits; total / per base)	17.902 / 0.716
Data sources	ChIP-Seq
Aligned words	970

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.923	0.941	0.912	0.931	0.928	0.948	8.144	8.571	506.292	580.086

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF343-like {2.3.3.61} (TFClass)
TFClass ID	TFClass: 2.3.3.61.4
HGNC	HGNC:12917
MGI
EntrezGene (human)	GeneID:7692 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN133_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52736 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN133.H12RSNP.0.P.D.pcm
PWM	ZN133.H12RSNP.0.P.D.pwm
PFM	ZN133.H12RSNP.0.P.D.pfm
Alignment	ZN133.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN133.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN133.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN133.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN133.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN133.H12RSNP.0.P.D_homer_format_0.001.txt ZN133.H12RSNP.0.P.D_homer_format_0.0005.txt ZN133.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	363.0	60.0	453.0	94.0
02	560.0	74.0	274.0	62.0
03	497.0	104.0	147.0	222.0
04	167.0	25.0	718.0	60.0
05	321.0	44.0	535.0	70.0
06	195.0	134.0	93.0	548.0
07	237.0	612.0	73.0	48.0
08	78.0	642.0	37.0	213.0
09	872.0	23.0	30.0	45.0
10	837.0	33.0	82.0	18.0
11	106.0	676.0	43.0	145.0
12	697.0	88.0	76.0	109.0
13	148.0	177.0	99.0	546.0
14	762.0	88.0	75.0	45.0
15	116.0	309.0	117.0	428.0
16	229.0	21.0	689.0	31.0
17	88.0	145.0	89.0	648.0
18	678.0	97.0	153.0	42.0
19	153.0	136.0	76.0	605.0
20	892.0	21.0	27.0	30.0
21	849.0	22.0	52.0	47.0
22	55.0	131.0	186.0	598.0
23	191.0	58.0	126.0	595.0
24	60.0	31.0	831.0	48.0
25	107.0	94.0	728.0	41.0

PFM

	A	C	G	T
01	0.374	0.062	0.467	0.097
02	0.577	0.076	0.282	0.064
03	0.512	0.107	0.152	0.229
04	0.172	0.026	0.74	0.062
05	0.331	0.045	0.552	0.072
06	0.201	0.138	0.096	0.565
07	0.244	0.631	0.075	0.049
08	0.08	0.662	0.038	0.22
09	0.899	0.024	0.031	0.046
10	0.863	0.034	0.085	0.019
11	0.109	0.697	0.044	0.149
12	0.719	0.091	0.078	0.112
13	0.153	0.182	0.102	0.563
14	0.786	0.091	0.077	0.046
15	0.12	0.319	0.121	0.441
16	0.236	0.022	0.71	0.032
17	0.091	0.149	0.092	0.668
18	0.699	0.1	0.158	0.043
19	0.158	0.14	0.078	0.624
20	0.92	0.022	0.028	0.031
21	0.875	0.023	0.054	0.048
22	0.057	0.135	0.192	0.616
23	0.197	0.06	0.13	0.613
24	0.062	0.032	0.857	0.049
25	0.11	0.097	0.751	0.042

PWM

	A	C	G	T
01	0.401	-1.375	0.622	-0.937
02	0.833	-1.171	0.121	-1.344
03	0.714	-0.837	-0.496	-0.088
04	-0.37	-2.213	1.081	-1.375
05	0.279	-1.676	0.787	-1.225
06	-0.216	-0.587	-0.947	0.811
07	-0.023	0.921	-1.184	-1.592
08	-1.12	0.969	-1.842	-0.129
09	1.275	-2.29	-2.041	-1.654
10	1.234	-1.951	-1.071	-2.516
11	-0.819	1.021	-1.698	-0.51
12	1.051	-1.001	-1.145	-0.791
13	-0.489	-0.312	-0.886	0.808
14	1.14	-1.001	-1.158	-1.654
15	-0.73	0.241	-0.721	0.565
16	-0.057	-2.375	1.04	-2.01
17	-1.001	-0.51	-0.99	0.978
18	1.024	-0.906	-0.456	-1.72
19	-0.456	-0.573	-1.145	0.91
20	1.297	-2.375	-2.14	-2.041
21	1.248	-2.332	-1.514	-1.612
22	-1.46	-0.61	-0.263	0.898
23	-0.237	-1.408	-0.648	0.893
24	-1.375	-2.01	1.227	-1.592
25	-0.809	-0.937	1.095	-1.743

Standard thresholds

P-value	Threshold
0.001	2.57556
0.0005	3.66636
0.0001	6.00391