ZN132.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN132.H12INVITRO.0.P.D
Gene (human)	ZNF132 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	nbYhbYYbKCCTTCCYhSYbYCCYb
GC content	59.54%
Information content (bits; total / per base)	20.023 / 0.801
Data sources	ChIP-Seq
Aligned words	237

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.851	0.881	0.738	0.77	0.862	0.901	7.15	7.427	52.216	65.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.70
HGNC	HGNC:12916
MGI
EntrezGene (human)	GeneID:7691 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN132_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P52740 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN132.H12INVITRO.0.P.D.pcm
PWM	ZN132.H12INVITRO.0.P.D.pwm
PFM	ZN132.H12INVITRO.0.P.D.pfm
Alignment	ZN132.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN132.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN132.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN132.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN132.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN132.H12INVITRO.0.P.D_homer_format_0.001.txt ZN132.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN132.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	52.0	73.0	34.0	78.0
02	26.0	116.0	41.0	54.0
03	17.0	151.0	33.0	36.0
04	31.0	108.0	20.0	78.0
05	23.0	74.0	28.0	112.0
06	12.0	156.0	26.0	43.0
07	20.0	161.0	25.0	31.0
08	12.0	62.0	40.0	123.0
09	12.0	27.0	33.0	165.0
10	1.0	211.0	8.0	17.0
11	1.0	231.0	2.0	3.0
12	11.0	39.0	1.0	186.0
13	4.0	4.0	10.0	219.0
14	2.0	228.0	5.0	2.0
15	3.0	215.0	11.0	8.0
16	10.0	159.0	4.0	64.0
17	43.0	56.0	28.0	110.0
18	12.0	174.0	27.0	24.0
19	6.0	80.0	6.0	145.0
20	18.0	108.0	22.0	89.0
21	5.0	33.0	19.0	180.0
22	2.0	215.0	3.0	17.0
23	1.0	215.0	2.0	19.0
24	10.0	90.0	18.0	119.0
25	11.0	58.0	38.0	130.0

PFM

	A	C	G	T
01	0.219	0.308	0.143	0.329
02	0.11	0.489	0.173	0.228
03	0.072	0.637	0.139	0.152
04	0.131	0.456	0.084	0.329
05	0.097	0.312	0.118	0.473
06	0.051	0.658	0.11	0.181
07	0.084	0.679	0.105	0.131
08	0.051	0.262	0.169	0.519
09	0.051	0.114	0.139	0.696
10	0.004	0.89	0.034	0.072
11	0.004	0.975	0.008	0.013
12	0.046	0.165	0.004	0.785
13	0.017	0.017	0.042	0.924
14	0.008	0.962	0.021	0.008
15	0.013	0.907	0.046	0.034
16	0.042	0.671	0.017	0.27
17	0.181	0.236	0.118	0.464
18	0.051	0.734	0.114	0.101
19	0.025	0.338	0.025	0.612
20	0.076	0.456	0.093	0.376
21	0.021	0.139	0.08	0.759
22	0.008	0.907	0.013	0.072
23	0.004	0.907	0.008	0.08
24	0.042	0.38	0.076	0.502
25	0.046	0.245	0.16	0.549

PWM

	A	C	G	T
01	-0.127	0.204	-0.539	0.27
02	-0.795	0.661	-0.358	-0.091
03	-1.194	0.922	-0.567	-0.484
04	-0.627	0.59	-1.043	0.27
05	-0.911	0.218	-0.725	0.626
06	-1.512	0.954	-0.795	-0.312
07	-1.043	0.985	-0.832	-0.627
08	-1.512	0.044	-0.382	0.719
09	-1.512	-0.759	-0.567	1.01
10	-3.243	1.254	-1.867	-1.194
11	-3.243	1.344	-2.891	-2.63
12	-1.59	-0.407	-3.243	1.128
13	-2.424	-2.424	-1.674	1.291
14	-2.891	1.331	-2.253	-2.891
15	-2.63	1.272	-1.59	-1.867
16	-1.674	0.973	-2.424	0.075
17	-0.312	-0.055	-0.725	0.608
18	-1.512	1.062	-0.759	-0.871
19	-2.108	0.294	-2.108	0.882
20	-1.141	0.59	-0.953	0.399
21	-2.253	-0.567	-1.091	1.096
22	-2.891	1.272	-2.63	-1.194
23	-3.243	1.272	-2.891	-1.091
24	-1.674	0.41	-1.141	0.686
25	-1.59	-0.021	-0.432	0.773

Standard thresholds

P-value	Threshold
0.001	1.65551
0.0005	2.87981
0.0001	5.48806