ZN121.H12RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN121.H12RSNP.0.P.B
Gene (human)	ZNF121 (GeneCards)
Gene synonyms (human)	ZNF20
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	21
Consensus	CTGGGCAAYAbAGYRAGACCC
GC content	59.11%
Information content (bits; total / per base)	29.201 / 1.391
Data sources	ChIP-Seq
Aligned words	834

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.882	0.954	0.858	0.93	0.921	0.983	14.99	17.429	193.553	311.26

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.614	0.954	0.114	0.054

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.112
HGNC	HGNC:12904
MGI
EntrezGene (human)	GeneID:7675 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN121_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P58317 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN121.H12RSNP.0.P.B.pcm
PWM	ZN121.H12RSNP.0.P.B.pwm
PFM	ZN121.H12RSNP.0.P.B.pfm
Alignment	ZN121.H12RSNP.0.P.B.words.tsv
Threshold to P-value map	ZN121.H12RSNP.0.P.B.thr
Motif in other formats
JASPAR format	ZN121.H12RSNP.0.P.B_jaspar_format.txt
MEME format	ZN121.H12RSNP.0.P.B_meme_format.meme
Transfac format	ZN121.H12RSNP.0.P.B_transfac_format.txt
Homer format	ZN121.H12RSNP.0.P.B_homer_format_0.001.txt ZN121.H12RSNP.0.P.B_homer_format_0.0005.txt ZN121.H12RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	12.0	796.0	5.0	21.0
02	43.0	10.0	53.0	728.0
03	5.0	3.0	823.0	3.0
04	11.0	9.0	810.0	4.0
05	67.0	47.0	718.0	2.0
06	10.0	814.0	6.0	4.0
07	758.0	51.0	14.0	11.0
08	740.0	24.0	61.0	9.0
09	30.0	646.0	56.0	102.0
10	723.0	19.0	70.0	22.0
11	20.0	173.0	222.0	419.0
12	771.0	16.0	18.0	29.0
13	10.0	9.0	804.0	11.0
14	16.0	502.0	23.0	293.0
15	440.0	37.0	344.0	13.0
16	788.0	17.0	18.0	11.0
17	7.0	2.0	820.0	5.0
18	792.0	10.0	25.0	7.0
19	11.0	711.0	6.0	106.0
20	16.0	747.0	11.0	60.0
21	12.0	800.0	3.0	19.0

PFM

	A	C	G	T
01	0.014	0.954	0.006	0.025
02	0.052	0.012	0.064	0.873
03	0.006	0.004	0.987	0.004
04	0.013	0.011	0.971	0.005
05	0.08	0.056	0.861	0.002
06	0.012	0.976	0.007	0.005
07	0.909	0.061	0.017	0.013
08	0.887	0.029	0.073	0.011
09	0.036	0.775	0.067	0.122
10	0.867	0.023	0.084	0.026
11	0.024	0.207	0.266	0.502
12	0.924	0.019	0.022	0.035
13	0.012	0.011	0.964	0.013
14	0.019	0.602	0.028	0.351
15	0.528	0.044	0.412	0.016
16	0.945	0.02	0.022	0.013
17	0.008	0.002	0.983	0.006
18	0.95	0.012	0.03	0.008
19	0.013	0.853	0.007	0.127
20	0.019	0.896	0.013	0.072
21	0.014	0.959	0.004	0.023

PWM

	A	C	G	T
01	-2.732	1.334	-3.449	-2.226
02	-1.548	-2.89	-1.346	1.245
03	-3.449	-3.804	1.367	-3.804
04	-2.808	-2.979	1.351	-3.611
05	-1.118	-1.463	1.231	-4.045
06	-2.89	1.356	-3.309	-3.611
07	1.285	-1.384	-2.595	-2.808
08	1.261	-2.102	-1.21	-2.979
09	-1.892	1.125	-1.293	-0.707
10	1.238	-2.319	-1.076	-2.183
11	-2.272	-0.185	0.062	0.694
12	1.302	-2.475	-2.368	-1.924
13	-2.89	-2.979	1.344	-2.808
14	-2.475	0.874	-2.142	0.338
15	0.743	-1.693	0.498	-2.661
16	1.324	-2.42	-2.368	-2.808
17	-3.187	-4.045	1.363	-3.449
18	1.329	-2.89	-2.064	-3.187
19	-2.808	1.221	-3.309	-0.669
20	-2.475	1.27	-2.808	-1.226
21	-2.732	1.339	-3.804	-2.319

Standard thresholds

P-value	Threshold
0.001	-4.88039
0.0005	-3.18494
0.0001	0.45801