ZN121.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN121.H12INVITRO.0.P.D
Gene (human)	ZNF121 (GeneCards)
Gene synonyms (human)	ZNF20
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	CCTGGGCAAYAbAGYRAGACCCY
GC content	60.68%
Information content (bits; total / per base)	31.215 / 1.357
Data sources	ChIP-Seq
Aligned words	869

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.884	0.955	0.858	0.931	0.924	0.984	16.084	18.819	200.292	304.854

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.889	0.536	0.112	0.052

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.112
HGNC	HGNC:12904
MGI
EntrezGene (human)	GeneID:7675 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN121_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P58317 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN121.H12INVITRO.0.P.D.pcm
PWM	ZN121.H12INVITRO.0.P.D.pwm
PFM	ZN121.H12INVITRO.0.P.D.pfm
Alignment	ZN121.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN121.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN121.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN121.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN121.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN121.H12INVITRO.0.P.D_homer_format_0.001.txt ZN121.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN121.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	87.0	717.0	45.0	20.0
02	10.0	824.0	6.0	29.0
03	42.0	12.0	60.0	755.0
04	2.0	2.0	860.0	5.0
05	14.0	11.0	840.0	4.0
06	70.0	44.0	753.0	2.0
07	9.0	851.0	7.0	2.0
08	800.0	42.0	12.0	15.0
09	768.0	19.0	71.0	11.0
10	28.0	676.0	56.0	109.0
11	743.0	19.0	85.0	22.0
12	14.0	199.0	199.0	457.0
13	801.0	13.0	15.0	40.0
14	6.0	8.0	845.0	10.0
15	16.0	535.0	18.0	300.0
16	459.0	35.0	364.0	11.0
17	814.0	19.0	21.0	15.0
18	9.0	8.0	848.0	4.0
19	818.0	10.0	31.0	10.0
20	5.0	756.0	10.0	98.0
21	11.0	782.0	11.0	65.0
22	8.0	837.0	6.0	18.0
23	29.0	530.0	16.0	294.0

PFM

	A	C	G	T
01	0.1	0.825	0.052	0.023
02	0.012	0.948	0.007	0.033
03	0.048	0.014	0.069	0.869
04	0.002	0.002	0.99	0.006
05	0.016	0.013	0.967	0.005
06	0.081	0.051	0.867	0.002
07	0.01	0.979	0.008	0.002
08	0.921	0.048	0.014	0.017
09	0.884	0.022	0.082	0.013
10	0.032	0.778	0.064	0.125
11	0.855	0.022	0.098	0.025
12	0.016	0.229	0.229	0.526
13	0.922	0.015	0.017	0.046
14	0.007	0.009	0.972	0.012
15	0.018	0.616	0.021	0.345
16	0.528	0.04	0.419	0.013
17	0.937	0.022	0.024	0.017
18	0.01	0.009	0.976	0.005
19	0.941	0.012	0.036	0.012
20	0.006	0.87	0.012	0.113
21	0.013	0.9	0.013	0.075
22	0.009	0.963	0.007	0.021
23	0.033	0.61	0.018	0.338

PWM

	A	C	G	T
01	-0.904	1.189	-1.545	-2.312
02	-2.93	1.327	-3.349	-1.965
03	-1.612	-2.772	-1.267	1.24
04	-4.083	-4.083	1.37	-3.488
05	-2.636	-2.848	1.347	-3.65
06	-1.116	-1.567	1.238	-4.083
07	-3.019	1.36	-3.226	-4.083
08	1.298	-1.612	-2.772	-2.574
09	1.257	-2.359	-1.103	-2.848
10	-1.998	1.13	-1.334	-0.682
11	1.224	-2.359	-0.926	-2.224
12	-2.636	-0.087	-0.087	0.74
13	1.299	-2.702	-2.574	-1.659
14	-3.349	-3.118	1.353	-2.93
15	-2.516	0.897	-2.409	0.321
16	0.744	-1.786	0.513	-2.848
17	1.315	-2.359	-2.267	-2.574
18	-3.019	-3.118	1.356	-3.65
19	1.32	-2.93	-1.902	-2.93
20	-3.488	1.241	-2.93	-0.787
21	-2.848	1.275	-2.848	-1.189
22	-3.118	1.343	-3.349	-2.409
23	-1.965	0.887	-2.516	0.301

Standard thresholds

P-value	Threshold
0.001	-6.11229
0.0005	-4.35754
0.0001	-0.58519