ZN112.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN112.H12INVIVO.0.P.C
Gene (human)	ZNF112 (GeneCards)
Gene synonyms (human)	ZFP112, ZNF228
Gene (mouse)	Znf112
Gene synonyms (mouse)	Zfp112
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	24
Consensus	TGCCMATTYCYRTGGTGTAAATAY
GC content	40.52%
Information content (bits; total / per base)	33.37 / 1.39
Data sources	ChIP-Seq
Aligned words	189

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.827	0.842	0.839	0.86	0.825	0.856	13.273	15.097	70.886	99.745

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.65
HGNC	HGNC:12892
MGI	MGI:1929115
EntrezGene (human)	GeneID:7771 (SSTAR profile)
EntrezGene (mouse)	GeneID:57745 (SSTAR profile)
UniProt ID (human)	ZN112_HUMAN
UniProt ID (mouse)	ZN112_MOUSE
UniProt AC (human)	Q9UJU3 (TFClass)
UniProt AC (mouse)	Q0VAW7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN112.H12INVIVO.0.P.C.pcm
PWM	ZN112.H12INVIVO.0.P.C.pwm
PFM	ZN112.H12INVIVO.0.P.C.pfm
Alignment	ZN112.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN112.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN112.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN112.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN112.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN112.H12INVIVO.0.P.C_homer_format_0.001.txt ZN112.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN112.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4.0	4.0	11.0	170.0
02	6.0	0.0	180.0	3.0
03	5.0	180.0	2.0	2.0
04	0.0	178.0	0.0	11.0
05	142.0	27.0	16.0	4.0
06	166.0	11.0	4.0	8.0
07	1.0	0.0	0.0	188.0
08	2.0	5.0	21.0	161.0
09	16.0	51.0	15.0	107.0
10	3.0	172.0	1.0	13.0
11	12.0	82.0	3.0	92.0
12	63.0	14.0	101.0	11.0
13	5.0	2.0	6.0	176.0
14	10.0	1.0	174.0	4.0
15	2.0	1.0	183.0	3.0
16	0.0	1.0	1.0	187.0
17	7.0	0.0	180.0	2.0
18	1.0	0.0	2.0	186.0
19	181.0	4.0	1.0	3.0
20	183.0	4.0	2.0	0.0
21	182.0	1.0	2.0	4.0
22	0.0	27.0	3.0	159.0
23	154.0	8.0	17.0	10.0
24	3.0	132.0	8.0	46.0

PFM

	A	C	G	T
01	0.021	0.021	0.058	0.899
02	0.032	0.0	0.952	0.016
03	0.026	0.952	0.011	0.011
04	0.0	0.942	0.0	0.058
05	0.751	0.143	0.085	0.021
06	0.878	0.058	0.021	0.042
07	0.005	0.0	0.0	0.995
08	0.011	0.026	0.111	0.852
09	0.085	0.27	0.079	0.566
10	0.016	0.91	0.005	0.069
11	0.063	0.434	0.016	0.487
12	0.333	0.074	0.534	0.058
13	0.026	0.011	0.032	0.931
14	0.053	0.005	0.921	0.021
15	0.011	0.005	0.968	0.016
16	0.0	0.005	0.005	0.989
17	0.037	0.0	0.952	0.011
18	0.005	0.0	0.011	0.984
19	0.958	0.021	0.005	0.016
20	0.968	0.021	0.011	0.0
21	0.963	0.005	0.011	0.021
22	0.0	0.143	0.016	0.841
23	0.815	0.042	0.09	0.053
24	0.016	0.698	0.042	0.243

PWM

	A	C	G	T
01	-2.213	-2.213	-1.372	1.261
02	-1.894	-3.612	1.317	-2.422
03	-2.041	1.317	-2.686	-2.686
04	-3.612	1.306	-3.612	-1.372
05	1.082	-0.54	-1.031	-2.213
06	1.237	-1.372	-2.213	-1.652
07	-3.045	-3.612	-3.612	1.361
08	-2.686	-2.041	-0.778	1.207
09	-1.031	0.074	-1.091	0.802
10	-2.422	1.272	-3.045	-1.222
11	-1.294	0.54	-2.422	0.653
12	0.281	-1.154	0.745	-1.372
13	-2.041	-2.686	-1.894	1.295
14	-1.457	-3.045	1.284	-2.213
15	-2.686	-3.045	1.334	-2.422
16	-3.612	-3.045	-3.045	1.355
17	-1.765	-3.612	1.317	-2.686
18	-3.045	-3.612	-2.686	1.35
19	1.323	-2.213	-3.045	-2.422
20	1.334	-2.213	-2.686	-3.612
21	1.328	-3.045	-2.686	-2.213
22	-3.612	-0.54	-2.422	1.194
23	1.163	-1.652	-0.975	-1.457
24	-2.422	1.01	-1.652	-0.026

Standard thresholds

P-value	Threshold
0.001	-5.84624
0.0005	-4.13049
0.0001	-0.43724