ZN101.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN101.H12INVIVO.0.P.C
Gene (human)	ZNF101 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	dWhbYnnbdGRbACWGGRGChdYhb
GC content	51.58%
Information content (bits; total / per base)	17.784 / 0.711
Data sources	ChIP-Seq
Aligned words	1006

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.974	0.981	0.966	0.973	0.979	0.984	7.58	7.714	584.432	663.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.51
HGNC	HGNC:12881
MGI
EntrezGene (human)	GeneID:94039 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN101_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IZC7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN101.H12INVIVO.0.P.C.pcm
PWM	ZN101.H12INVIVO.0.P.C.pwm
PFM	ZN101.H12INVIVO.0.P.C.pfm
Alignment	ZN101.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN101.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN101.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN101.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN101.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN101.H12INVIVO.0.P.C_homer_format_0.001.txt ZN101.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN101.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	345.0	89.0	111.0	461.0
02	220.0	117.0	72.0	597.0
03	191.0	256.0	138.0	421.0
04	163.0	324.0	164.0	355.0
05	73.0	121.0	68.0	744.0
06	239.0	180.0	279.0	308.0
07	239.0	158.0	282.0	327.0
08	145.0	164.0	247.0	450.0
09	274.0	44.0	269.0	419.0
10	28.0	13.0	890.0	75.0
11	746.0	65.0	172.0	23.0
12	54.0	446.0	115.0	391.0
13	840.0	24.0	109.0	33.0
14	4.0	988.0	3.0	11.0
15	452.0	16.0	168.0	370.0
16	22.0	1.0	981.0	2.0
17	11.0	2.0	980.0	13.0
18	202.0	5.0	735.0	64.0
19	39.0	14.0	924.0	29.0
20	1.0	926.0	9.0	70.0
21	340.0	438.0	28.0	200.0
22	569.0	56.0	183.0	198.0
23	29.0	752.0	85.0	140.0
24	336.0	315.0	78.0	277.0
25	89.0	206.0	163.0	548.0

PFM

	A	C	G	T
01	0.343	0.088	0.11	0.458
02	0.219	0.116	0.072	0.593
03	0.19	0.254	0.137	0.418
04	0.162	0.322	0.163	0.353
05	0.073	0.12	0.068	0.74
06	0.238	0.179	0.277	0.306
07	0.238	0.157	0.28	0.325
08	0.144	0.163	0.246	0.447
09	0.272	0.044	0.267	0.417
10	0.028	0.013	0.885	0.075
11	0.742	0.065	0.171	0.023
12	0.054	0.443	0.114	0.389
13	0.835	0.024	0.108	0.033
14	0.004	0.982	0.003	0.011
15	0.449	0.016	0.167	0.368
16	0.022	0.001	0.975	0.002
17	0.011	0.002	0.974	0.013
18	0.201	0.005	0.731	0.064
19	0.039	0.014	0.918	0.029
20	0.001	0.92	0.009	0.07
21	0.338	0.435	0.028	0.199
22	0.566	0.056	0.182	0.197
23	0.029	0.748	0.084	0.139
24	0.334	0.313	0.078	0.275
25	0.088	0.205	0.162	0.545

PWM

	A	C	G	T
01	0.314	-1.026	-0.809	0.603
02	-0.133	-0.757	-1.234	0.861
03	-0.273	0.018	-0.595	0.512
04	-0.43	0.252	-0.424	0.343
05	-1.22	-0.724	-1.29	1.08
06	-0.051	-0.332	0.103	0.201
07	-0.051	-0.461	0.114	0.261
08	-0.546	-0.424	-0.018	0.579
09	0.085	-1.712	0.067	0.508
10	-2.142	-2.845	1.259	-1.194
11	1.083	-1.334	-0.377	-2.326
12	-1.514	0.57	-0.774	0.439
13	1.201	-2.287	-0.827	-1.987
14	-3.789	1.363	-3.981	-2.99
15	0.583	-2.659	-0.4	0.384
16	-2.368	-4.531	1.356	-4.218
17	-2.99	-4.218	1.355	-2.845
18	-0.218	-3.628	1.068	-1.349
19	-1.827	-2.779	1.296	-2.109
20	-4.531	1.298	-3.161	-1.261
21	0.3	0.552	-2.142	-0.227
22	0.813	-1.479	-0.315	-0.237
23	-2.109	1.091	-1.072	-0.58
24	0.288	0.224	-1.156	0.096
25	-1.026	-0.198	-0.43	0.775

Standard thresholds

P-value	Threshold
0.001	1.89996
0.0005	3.15996
0.0001	5.81261