ZN100.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN100.H12INVITRO.0.P.D
Gene (human)	ZNF100 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GCAYKTCTTACATGGYGGYGGCM
GC content	56.15%
Information content (bits; total / per base)	32.869 / 1.429
Data sources	ChIP-Seq
Aligned words	544

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (12)	0.942	0.991	0.923	0.986	0.919	0.986	13.026	19.324	485.72	612.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF100-like {2.3.3.59} (TFClass)
TFClass ID	TFClass: 2.3.3.59.1
HGNC	HGNC:12880
MGI
EntrezGene (human)	GeneID:163227 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN100_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IYN0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN100.H12INVITRO.0.P.D.pcm
PWM	ZN100.H12INVITRO.0.P.D.pwm
PFM	ZN100.H12INVITRO.0.P.D.pfm
Alignment	ZN100.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN100.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN100.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN100.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN100.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN100.H12INVITRO.0.P.D_homer_format_0.001.txt ZN100.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN100.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	13.0	506.0	12.0
02	10.0	503.0	16.0	15.0
03	526.0	7.0	8.0	3.0
04	13.0	421.0	21.0	89.0
05	14.0	16.0	111.0	403.0
06	10.0	10.0	24.0	500.0
07	6.0	484.0	3.0	51.0
08	10.0	28.0	10.0	496.0
09	7.0	14.0	11.0	512.0
10	490.0	50.0	3.0	1.0
11	5.0	513.0	7.0	19.0
12	536.0	1.0	6.0	1.0
13	20.0	17.0	9.0	498.0
14	3.0	0.0	541.0	0.0
15	0.0	0.0	544.0	0.0
16	17.0	242.0	6.0	279.0
17	83.0	0.0	456.0	5.0
18	4.0	1.0	538.0	1.0
19	13.0	292.0	3.0	236.0
20	94.0	1.0	448.0	1.0
21	0.0	4.0	534.0	6.0
22	23.0	455.0	48.0	18.0
23	408.0	78.0	23.0	35.0

PFM

	A	C	G	T
01	0.024	0.024	0.93	0.022
02	0.018	0.925	0.029	0.028
03	0.967	0.013	0.015	0.006
04	0.024	0.774	0.039	0.164
05	0.026	0.029	0.204	0.741
06	0.018	0.018	0.044	0.919
07	0.011	0.89	0.006	0.094
08	0.018	0.051	0.018	0.912
09	0.013	0.026	0.02	0.941
10	0.901	0.092	0.006	0.002
11	0.009	0.943	0.013	0.035
12	0.985	0.002	0.011	0.002
13	0.037	0.031	0.017	0.915
14	0.006	0.0	0.994	0.0
15	0.0	0.0	1.0	0.0
16	0.031	0.445	0.011	0.513
17	0.153	0.0	0.838	0.009
18	0.007	0.002	0.989	0.002
19	0.024	0.537	0.006	0.434
20	0.173	0.002	0.824	0.002
21	0.0	0.007	0.982	0.011
22	0.042	0.836	0.088	0.033
23	0.75	0.143	0.042	0.064

PWM

	A	C	G	T
01	-2.245	-2.245	1.305	-2.316
02	-2.475	1.3	-2.058	-2.116
03	1.344	-2.775	-2.665	-3.404
04	-2.245	1.122	-1.807	-0.418
05	-2.179	-2.058	-0.201	1.079
06	-2.475	-2.475	-1.683	1.294
07	-2.899	1.261	-3.404	-0.962
08	-2.475	-1.537	-2.475	1.286
09	-2.775	-2.179	-2.392	1.317
10	1.273	-0.981	-3.404	-3.978
11	-3.041	1.319	-2.775	-1.9
12	1.363	-3.978	-2.899	-3.978
13	-1.853	-2.002	-2.566	1.29
14	-3.404	-4.47	1.372	-4.47
15	-4.47	-4.47	1.378	-4.47
16	-2.002	0.571	-2.899	0.713
17	-0.487	-4.47	1.202	-3.041
18	-3.206	-3.978	1.367	-3.978
19	-2.245	0.758	-3.404	0.546
20	-0.364	-3.978	1.184	-3.978
21	-4.47	-3.206	1.359	-2.899
22	-1.722	1.2	-1.021	-1.95
23	1.091	-0.547	-1.722	-1.325

Standard thresholds

P-value	Threshold
0.001	-7.75269
0.0005	-5.87939
0.0001	-1.85789