ZKSC8.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZKSC8.H12INVITRO.1.P.D
Gene (human)	ZKSCAN8 (GeneCards)
Gene synonyms (human)	ZNF192
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	15
Consensus	bdSYWdCTGYdTRCh
GC content	51.98%
Information content (bits; total / per base)	11.258 / 0.751
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.723	0.791	0.65	0.755	0.74	0.818	3.602	5.279	80.153	161.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.81
HGNC	HGNC:12983
MGI
EntrezGene (human)	GeneID:7745 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZKSC8_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15776 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZKSC8.H12INVITRO.1.P.D.pcm
PWM	ZKSC8.H12INVITRO.1.P.D.pwm
PFM	ZKSC8.H12INVITRO.1.P.D.pfm
Alignment	ZKSC8.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZKSC8.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZKSC8.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZKSC8.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZKSC8.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZKSC8.H12INVITRO.1.P.D_homer_format_0.001.txt ZKSC8.H12INVITRO.1.P.D_homer_format_0.0005.txt ZKSC8.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	106.0	582.0	117.0	195.0
02	467.0	82.0	321.0	130.0
03	50.0	753.0	116.0	81.0
04	48.0	747.0	45.0	160.0
05	205.0	92.0	48.0	655.0
06	381.0	151.0	306.0	162.0
07	38.0	829.0	69.0	64.0
08	38.0	17.0	15.0	930.0
09	36.0	74.0	876.0	14.0
10	54.0	129.0	60.0	757.0
11	301.0	85.0	292.0	322.0
12	21.0	39.0	43.0	897.0
13	355.0	69.0	508.0	68.0
14	35.0	871.0	18.0	76.0
15	337.0	395.0	48.0	220.0

PFM

	A	C	G	T
01	0.106	0.582	0.117	0.195
02	0.467	0.082	0.321	0.13
03	0.05	0.753	0.116	0.081
04	0.048	0.747	0.045	0.16
05	0.205	0.092	0.048	0.655
06	0.381	0.151	0.306	0.162
07	0.038	0.829	0.069	0.064
08	0.038	0.017	0.015	0.93
09	0.036	0.074	0.876	0.014
10	0.054	0.129	0.06	0.757
11	0.301	0.085	0.292	0.322
12	0.021	0.039	0.043	0.897
13	0.355	0.069	0.508	0.068
14	0.035	0.871	0.018	0.076
15	0.337	0.395	0.048	0.22

PWM

	A	C	G	T
01	-0.849	0.841	-0.752	-0.247
02	0.622	-1.101	0.248	-0.648
03	-1.582	1.098	-0.76	-1.113
04	-1.622	1.09	-1.684	-0.442
05	-0.197	-0.988	-1.622	0.959
06	0.419	-0.5	0.201	-0.43
07	-1.846	1.194	-1.27	-1.343
08	-1.846	-2.598	-2.711	1.309
09	-1.898	-1.201	1.249	-2.773
10	-1.508	-0.655	-1.406	1.103
11	0.184	-1.066	0.154	0.252
12	-2.405	-1.821	-1.728	1.273
13	0.349	-1.27	0.706	-1.284
14	-1.925	1.243	-2.546	-1.175
15	0.297	0.455	-1.622	-0.127

Standard thresholds

P-value	Threshold
0.001	4.41521
0.0005	5.28076
0.0001	7.09876