ZKSC8.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZKSC8.H12INVITRO.0.P.D
Gene (human)	ZKSCAN8 (GeneCards)
Gene synonyms (human)	ZNF192
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	dbvdvYMhdYMYKRRRYRSSKdCTGKdTRMh
GC content	45.9%
Information content (bits; total / per base)	17.32 / 0.559
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.752	0.9	0.689	0.859	0.736	0.915	6.557	10.971	90.333	277.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.81
HGNC	HGNC:12983
MGI
EntrezGene (human)	GeneID:7745 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZKSC8_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q15776 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZKSC8.H12INVITRO.0.P.D.pcm
PWM	ZKSC8.H12INVITRO.0.P.D.pwm
PFM	ZKSC8.H12INVITRO.0.P.D.pfm
Alignment	ZKSC8.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZKSC8.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZKSC8.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZKSC8.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZKSC8.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZKSC8.H12INVITRO.0.P.D_homer_format_0.001.txt ZKSC8.H12INVITRO.0.P.D_homer_format_0.0005.txt ZKSC8.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	300.0	150.0	389.0	156.0
02	128.0	437.0	142.0	288.0
03	411.0	215.0	212.0	157.0
04	529.0	110.0	187.0	169.0
05	269.0	250.0	377.0	99.0
06	63.0	561.0	76.0	295.0
07	563.0	298.0	72.0	62.0
08	157.0	322.0	56.0	460.0
09	277.0	85.0	110.0	523.0
10	61.0	137.0	97.0	700.0
11	619.0	226.0	64.0	86.0
12	101.0	134.0	63.0	697.0
13	50.0	60.0	120.0	765.0
14	233.0	65.0	580.0	117.0
15	677.0	31.0	189.0	98.0
16	257.0	48.0	652.0	38.0
17	74.0	579.0	54.0	288.0
18	560.0	57.0	295.0	83.0
19	73.0	677.0	191.0	54.0
20	69.0	620.0	167.0	139.0
21	161.0	58.0	189.0	587.0
22	416.0	79.0	412.0	88.0
23	28.0	843.0	44.0	80.0
24	48.0	32.0	31.0	884.0
25	55.0	38.0	863.0	39.0
26	83.0	90.0	202.0	620.0
27	448.0	66.0	364.0	117.0
28	41.0	29.0	55.0	870.0
29	483.0	49.0	415.0	48.0
30	210.0	697.0	36.0	52.0
31	417.0	365.0	46.0	167.0

PFM

	A	C	G	T
01	0.302	0.151	0.391	0.157
02	0.129	0.439	0.143	0.289
03	0.413	0.216	0.213	0.158
04	0.532	0.111	0.188	0.17
05	0.27	0.251	0.379	0.099
06	0.063	0.564	0.076	0.296
07	0.566	0.299	0.072	0.062
08	0.158	0.324	0.056	0.462
09	0.278	0.085	0.111	0.526
10	0.061	0.138	0.097	0.704
11	0.622	0.227	0.064	0.086
12	0.102	0.135	0.063	0.701
13	0.05	0.06	0.121	0.769
14	0.234	0.065	0.583	0.118
15	0.68	0.031	0.19	0.098
16	0.258	0.048	0.655	0.038
17	0.074	0.582	0.054	0.289
18	0.563	0.057	0.296	0.083
19	0.073	0.68	0.192	0.054
20	0.069	0.623	0.168	0.14
21	0.162	0.058	0.19	0.59
22	0.418	0.079	0.414	0.088
23	0.028	0.847	0.044	0.08
24	0.048	0.032	0.031	0.888
25	0.055	0.038	0.867	0.039
26	0.083	0.09	0.203	0.623
27	0.45	0.066	0.366	0.118
28	0.041	0.029	0.055	0.874
29	0.485	0.049	0.417	0.048
30	0.211	0.701	0.036	0.052
31	0.419	0.367	0.046	0.168

PWM

	A	C	G	T
01	0.186	-0.501	0.445	-0.463
02	-0.658	0.561	-0.555	0.146
03	0.499	-0.145	-0.159	-0.456
04	0.751	-0.807	-0.283	-0.383
05	0.078	0.005	0.413	-0.911
06	-1.353	0.809	-1.17	0.169
07	0.813	0.18	-1.223	-1.369
08	-0.456	0.257	-1.468	0.612
09	0.107	-1.061	-0.807	0.74
10	-1.385	-0.591	-0.931	1.03
11	0.908	-0.095	-1.338	-1.049
12	-0.891	-0.613	-1.353	1.026
13	-1.577	-1.401	-0.722	1.119
14	-0.065	-1.323	0.843	-0.747
15	0.997	-2.035	-0.273	-0.921
16	0.032	-1.617	0.959	-1.841
17	-1.196	0.841	-1.503	0.146
18	0.808	-1.45	0.169	-1.084
19	-1.21	0.997	-0.262	-1.503
20	-1.265	0.909	-0.395	-0.577
21	-0.431	-1.434	-0.273	0.855
22	0.511	-1.132	0.502	-1.027
23	-2.131	1.216	-1.701	-1.12
24	-1.617	-2.005	-2.035	1.263
25	-1.485	-1.841	1.239	-1.817
26	-1.084	-1.005	-0.207	0.909
27	0.585	-1.308	0.379	-0.747
28	-1.769	-2.098	-1.485	1.247
29	0.66	-1.597	0.509	-1.617
30	-0.168	1.026	-1.893	-1.539
31	0.514	0.381	-1.658	-0.395

Standard thresholds

P-value	Threshold
0.001	2.82271
0.0005	3.88226
0.0001	6.15301