MotifZKSC1.H12INVITRO.0.P.D
Gene (human)ZKSCAN1
(GeneCards)
Gene synonyms (human)KOX18, ZNF139, ZNF36
Gene (mouse)Zkscan1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length19
ConsensusdvhdbhCCTACTRTGTGYh
GC content52.1%
Information content (bits; total / per base)18.636 / 0.981
Data sourcesChIP-Seq
Aligned words981

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (20) 0.899 0.947 0.82 0.926 0.907 0.954 8.417 9.927 416.422 493.824
Mouse 2 (12) 0.934 0.96 0.915 0.943 0.938 0.971 8.192 8.733 441.372 589.0
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF24-like {2.3.3.10} (TFClass)
TFClass IDTFClass: 2.3.3.10.6
HGNCHGNC:13101
MGIMGI:1921820
EntrezGene (human)GeneID:7586
(SSTAR profile)
EntrezGene (mouse)GeneID:74570
(SSTAR profile)
UniProt ID (human)ZKSC1_HUMAN
UniProt ID (mouse)ZKSC1_MOUSE
UniProt AC (human)P17029
(TFClass)
UniProt AC (mouse)Q8BGS3
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01260.090.0149.0482.0
02221.0106.0558.096.0
03435.0188.0104.0254.0
04333.075.0461.0112.0
0581.0252.0477.0171.0
06469.0190.0148.0174.0
078.0966.04.03.0
0858.0872.01.050.0
097.0136.035.0803.0
10960.02.012.07.0
115.0951.018.07.0
129.09.04.0959.0
13397.014.0565.05.0
14104.034.046.0797.0
151.012.0964.04.0
1619.0147.030.0785.0
1740.016.0877.048.0
1851.0754.047.0129.0
19253.0338.059.0331.0
PFM
ACGT
010.2650.0920.1520.491
020.2250.1080.5690.098
030.4430.1920.1060.259
040.3390.0760.470.114
050.0830.2570.4860.174
060.4780.1940.1510.177
070.0080.9850.0040.003
080.0590.8890.0010.051
090.0070.1390.0360.819
100.9790.0020.0120.007
110.0050.9690.0180.007
120.0090.0090.0040.978
130.4050.0140.5760.005
140.1060.0350.0470.812
150.0010.0120.9830.004
160.0190.150.0310.8
170.0410.0160.8940.049
180.0520.7690.0480.131
190.2580.3450.060.337
PWM
ACGT
010.058-0.991-0.4940.672
02-0.103-0.830.818-0.927
030.57-0.264-0.8480.035
040.304-1.1690.628-0.776
05-1.0940.0270.662-0.358
060.645-0.253-0.5-0.34
07-3.2351.366-3.765-3.957
08-1.421.263-4.508-1.563
09-3.343-0.584-1.9061.181
101.359-4.195-2.89-3.343
11-3.6041.35-2.528-3.343
12-3.137-3.137-3.7651.358
130.479-2.7540.831-3.604
14-0.848-1.934-1.6441.174
15-4.508-2.891.364-3.765
16-2.478-0.507-2.0521.159
17-1.778-2.6341.269-1.603
18-1.5441.118-1.623-0.636
190.0310.319-1.4030.298
Standard thresholds
P-value Threshold
0.001 1.13701
0.0005 2.49181
0.0001 5.35226