ZKSC1.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZKSC1.H12INVITRO.0.P.D
Gene (human)	ZKSCAN1 (GeneCards)
Gene synonyms (human)	KOX18, ZNF139, ZNF36
Gene (mouse)	Zkscan1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	dvhdbhCCTACTRTGTGYh
GC content	52.1%
Information content (bits; total / per base)	18.636 / 0.981
Data sources	ChIP-Seq
Aligned words	981

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (20)	0.899	0.947	0.82	0.926	0.907	0.954	8.417	9.927	416.422	493.824
Mouse	2 (12)	0.934	0.96	0.915	0.943	0.938	0.971	8.192	8.733	441.372	589.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF24-like {2.3.3.10} (TFClass)
TFClass ID	TFClass: 2.3.3.10.6
HGNC	HGNC:13101
MGI	MGI:1921820
EntrezGene (human)	GeneID:7586 (SSTAR profile)
EntrezGene (mouse)	GeneID:74570 (SSTAR profile)
UniProt ID (human)	ZKSC1_HUMAN
UniProt ID (mouse)	ZKSC1_MOUSE
UniProt AC (human)	P17029 (TFClass)
UniProt AC (mouse)	Q8BGS3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZKSC1.H12INVITRO.0.P.D.pcm
PWM	ZKSC1.H12INVITRO.0.P.D.pwm
PFM	ZKSC1.H12INVITRO.0.P.D.pfm
Alignment	ZKSC1.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZKSC1.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZKSC1.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZKSC1.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZKSC1.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZKSC1.H12INVITRO.0.P.D_homer_format_0.001.txt ZKSC1.H12INVITRO.0.P.D_homer_format_0.0005.txt ZKSC1.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	260.0	90.0	149.0	482.0
02	221.0	106.0	558.0	96.0
03	435.0	188.0	104.0	254.0
04	333.0	75.0	461.0	112.0
05	81.0	252.0	477.0	171.0
06	469.0	190.0	148.0	174.0
07	8.0	966.0	4.0	3.0
08	58.0	872.0	1.0	50.0
09	7.0	136.0	35.0	803.0
10	960.0	2.0	12.0	7.0
11	5.0	951.0	18.0	7.0
12	9.0	9.0	4.0	959.0
13	397.0	14.0	565.0	5.0
14	104.0	34.0	46.0	797.0
15	1.0	12.0	964.0	4.0
16	19.0	147.0	30.0	785.0
17	40.0	16.0	877.0	48.0
18	51.0	754.0	47.0	129.0
19	253.0	338.0	59.0	331.0

PFM

	A	C	G	T
01	0.265	0.092	0.152	0.491
02	0.225	0.108	0.569	0.098
03	0.443	0.192	0.106	0.259
04	0.339	0.076	0.47	0.114
05	0.083	0.257	0.486	0.174
06	0.478	0.194	0.151	0.177
07	0.008	0.985	0.004	0.003
08	0.059	0.889	0.001	0.051
09	0.007	0.139	0.036	0.819
10	0.979	0.002	0.012	0.007
11	0.005	0.969	0.018	0.007
12	0.009	0.009	0.004	0.978
13	0.405	0.014	0.576	0.005
14	0.106	0.035	0.047	0.812
15	0.001	0.012	0.983	0.004
16	0.019	0.15	0.031	0.8
17	0.041	0.016	0.894	0.049
18	0.052	0.769	0.048	0.131
19	0.258	0.345	0.06	0.337

PWM

	A	C	G	T
01	0.058	-0.991	-0.494	0.672
02	-0.103	-0.83	0.818	-0.927
03	0.57	-0.264	-0.848	0.035
04	0.304	-1.169	0.628	-0.776
05	-1.094	0.027	0.662	-0.358
06	0.645	-0.253	-0.5	-0.34
07	-3.235	1.366	-3.765	-3.957
08	-1.42	1.263	-4.508	-1.563
09	-3.343	-0.584	-1.906	1.181
10	1.359	-4.195	-2.89	-3.343
11	-3.604	1.35	-2.528	-3.343
12	-3.137	-3.137	-3.765	1.358
13	0.479	-2.754	0.831	-3.604
14	-0.848	-1.934	-1.644	1.174
15	-4.508	-2.89	1.364	-3.765
16	-2.478	-0.507	-2.052	1.159
17	-1.778	-2.634	1.269	-1.603
18	-1.544	1.118	-1.623	-0.636
19	0.031	0.319	-1.403	0.298

Standard thresholds

P-value	Threshold
0.001	1.13701
0.0005	2.49181
0.0001	5.35226