ZIM3.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZIM3.H12INVIVO.0.P.B
Gene (human)	ZIM3 (GeneCards)
Gene synonyms (human)	ZNF657
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	19
Consensus	bdRGnWTTCTGTTdbhdbh
GC content	41.64%
Information content (bits; total / per base)	17.002 / 0.895
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (7)	0.969	0.989	0.955	0.977	0.975	0.993	6.753	7.051	635.222	664.292

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.104
HGNC	HGNC:16366
MGI
EntrezGene (human)	GeneID:114026 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZIM3_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96PE6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZIM3.H12INVIVO.0.P.B.pcm
PWM	ZIM3.H12INVIVO.0.P.B.pwm
PFM	ZIM3.H12INVIVO.0.P.B.pfm
Alignment	ZIM3.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZIM3.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZIM3.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZIM3.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZIM3.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZIM3.H12INVIVO.0.P.B_homer_format_0.001.txt ZIM3.H12INVIVO.0.P.B_homer_format_0.0005.txt ZIM3.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	141.0	161.0	269.0	430.0
02	128.25	85.25	241.25	546.25
03	419.25	32.25	451.25	98.25
04	20.25	5.25	901.25	74.25
05	199.25	195.25	403.25	203.25
06	166.25	51.25	18.25	765.25
07	3.25	3.25	1.25	993.25
08	12.25	18.25	79.25	891.25
09	0.5	999.5	0.5	0.5
10	5.5	8.5	1.5	985.5
11	10.5	13.5	940.5	36.5
12	25.5	8.5	6.5	960.5
13	2.5	6.5	1.5	990.5
14	204.5	82.5	450.5	263.5
15	120.5	486.5	152.5	241.5
16	116.5	287.5	73.5	523.5
17	185.5	132.5	199.5	483.5
18	156.5	183.5	431.5	229.5
19	148.5	398.5	137.5	316.5

PFM

	A	C	G	T
01	0.141	0.161	0.269	0.43
02	0.128	0.085	0.241	0.546
03	0.419	0.032	0.451	0.098
04	0.02	0.005	0.9	0.074
05	0.199	0.195	0.403	0.203
06	0.166	0.051	0.018	0.764
07	0.003	0.003	0.001	0.992
08	0.012	0.018	0.079	0.89
09	0.0	0.999	0.0	0.0
10	0.005	0.008	0.001	0.985
11	0.01	0.013	0.94	0.036
12	0.025	0.008	0.006	0.96
13	0.002	0.006	0.001	0.99
14	0.204	0.082	0.45	0.263
15	0.12	0.486	0.152	0.241
16	0.116	0.287	0.073	0.523
17	0.185	0.132	0.199	0.483
18	0.156	0.183	0.431	0.229
19	0.148	0.398	0.137	0.316

PWM

	A	C	G	T
01	-0.568	-0.437	0.072	0.538
02	-0.662	-1.064	-0.036	0.777
03	0.513	-2.004	0.587	-0.924
04	-2.439	-3.587	1.276	-1.199
05	-0.226	-0.246	0.474	-0.206
06	-0.406	-1.559	-2.535	1.113
07	-3.924	-3.924	-4.438	1.373
08	-2.892	-2.535	-1.135	1.265
09	-4.729	1.38	-4.729	-4.729
10	-3.551	-3.204	-4.358	1.366
11	-3.026	-2.806	1.319	-1.886
12	-2.225	-3.204	-3.422	1.34
13	-4.088	-3.422	-4.358	1.371
14	-0.2	-1.096	0.585	0.051
15	-0.723	0.661	-0.491	-0.035
16	-0.757	0.138	-1.209	0.734
17	-0.297	-0.63	-0.225	0.655
18	-0.465	-0.308	0.542	-0.086
19	-0.517	0.463	-0.593	0.233

Standard thresholds

P-value	Threshold
0.001	1.61871
0.0005	2.97811
0.0001	5.83091