ZIK1.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZIK1.H12INVIVO.0.P.C
Gene (human)	ZIK1 (GeneCards)
Gene synonyms (human)	ZNF762
Gene (mouse)	Zik1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	vhRdRRdRRCAAWRKCAMhdvvW
GC content	41.17%
Information content (bits; total / per base)	15.815 / 0.688
Data sources	ChIP-Seq
Aligned words	613

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.909	0.927	0.884	0.897	0.935	0.954	6.337	6.504	141.922	165.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF32-like {2.3.3.41} (TFClass)
TFClass ID	TFClass: 2.3.3.41.2
HGNC	HGNC:33104
MGI	MGI:108070
EntrezGene (human)	GeneID:284307 (SSTAR profile)
EntrezGene (mouse)	GeneID:22775 (SSTAR profile)
UniProt ID (human)	ZIK1_HUMAN
UniProt ID (mouse)	ZIK1_MOUSE
UniProt AC (human)	Q3SY52 (TFClass)
UniProt AC (mouse)	Q80YP6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZIK1.H12INVIVO.0.P.C.pcm
PWM	ZIK1.H12INVIVO.0.P.C.pwm
PFM	ZIK1.H12INVIVO.0.P.C.pfm
Alignment	ZIK1.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZIK1.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZIK1.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZIK1.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZIK1.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZIK1.H12INVIVO.0.P.C_homer_format_0.001.txt ZIK1.H12INVIVO.0.P.C_homer_format_0.0005.txt ZIK1.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	290.0	103.0	123.0	97.0
02	184.0	231.0	77.0	121.0
03	379.0	67.0	84.0	83.0
04	263.0	67.0	118.0	165.0
05	408.0	57.0	97.0	51.0
06	479.0	35.0	78.0	21.0
07	207.0	30.0	118.0	258.0
08	159.0	2.0	378.0	74.0
09	126.0	27.0	454.0	6.0
10	35.0	564.0	9.0	5.0
11	601.0	4.0	3.0	5.0
12	562.0	13.0	23.0	15.0
13	380.0	68.0	20.0	145.0
14	322.0	4.0	278.0	9.0
15	57.0	7.0	475.0	74.0
16	19.0	551.0	3.0	40.0
17	493.0	63.0	9.0	48.0
18	282.0	265.0	46.0	20.0
19	282.0	111.0	79.0	141.0
20	319.0	26.0	172.0	96.0
21	158.0	236.0	145.0	74.0
22	166.0	89.0	283.0	75.0
23	397.0	46.0	66.0	104.0

PFM

	A	C	G	T
01	0.473	0.168	0.201	0.158
02	0.3	0.377	0.126	0.197
03	0.618	0.109	0.137	0.135
04	0.429	0.109	0.192	0.269
05	0.666	0.093	0.158	0.083
06	0.781	0.057	0.127	0.034
07	0.338	0.049	0.192	0.421
08	0.259	0.003	0.617	0.121
09	0.206	0.044	0.741	0.01
10	0.057	0.92	0.015	0.008
11	0.98	0.007	0.005	0.008
12	0.917	0.021	0.038	0.024
13	0.62	0.111	0.033	0.237
14	0.525	0.007	0.454	0.015
15	0.093	0.011	0.775	0.121
16	0.031	0.899	0.005	0.065
17	0.804	0.103	0.015	0.078
18	0.46	0.432	0.075	0.033
19	0.46	0.181	0.129	0.23
20	0.52	0.042	0.281	0.157
21	0.258	0.385	0.237	0.121
22	0.271	0.145	0.462	0.122
23	0.648	0.075	0.108	0.17

PWM

	A	C	G	T
01	0.633	-0.392	-0.217	-0.451
02	0.181	0.407	-0.678	-0.234
03	0.899	-0.814	-0.593	-0.604
04	0.536	-0.814	-0.258	0.073
05	0.973	-0.972	-0.451	-1.08
06	1.133	-1.442	-0.665	-1.924
07	0.298	-1.589	-0.258	0.517
08	0.036	-3.76	0.897	-0.717
09	-0.194	-1.689	1.079	-3.014
10	-1.442	1.295	-2.681	-3.155
11	1.359	-3.319	-3.515	-3.155
12	1.292	-2.361	-1.84	-2.233
13	0.902	-0.8	-1.97	-0.055
14	0.737	-3.319	0.591	-2.681
15	-0.972	-2.89	1.124	-0.717
16	-2.017	1.272	-3.515	-1.314
17	1.161	-0.874	-2.681	-1.138
18	0.605	0.543	-1.18	-1.97
19	0.605	-0.319	-0.653	-0.082
20	0.728	-1.725	0.114	-0.462
21	0.03	0.428	-0.055	-0.717
22	0.079	-0.536	0.609	-0.704
23	0.945	-1.18	-0.829	-0.383

Standard thresholds

P-value	Threshold
0.001	3.03566
0.0005	4.13951
0.0001	6.46296