ZFX.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFX.H12INVIVO.0.P.B
Gene (human)	ZFX (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfx
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	10
Consensus	ShAGGCCbSR
GC content	74.47%
Information content (bits; total / per base)	11.228 / 1.123
Data sources	ChIP-Seq
Aligned words	438

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	20 (123)	0.84	0.882	0.684	0.779	0.744	0.779	1.93	2.084	41.377	164.886
Mouse	1 (7)	0.882	0.909	0.75	0.806	0.738	0.756	1.864	1.952	133.387	143.886

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.68	12.004	0.098	0.053

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZFX-ZFY {2.3.3.65} (TFClass)
TFClass ID	TFClass: 2.3.3.65.1
HGNC	HGNC:12869
MGI	MGI:99211
EntrezGene (human)	GeneID:7543 (SSTAR profile)
EntrezGene (mouse)	GeneID:22764 (SSTAR profile)
UniProt ID (human)	ZFX_HUMAN
UniProt ID (mouse)	ZFX_MOUSE
UniProt AC (human)	P17010 (TFClass)
UniProt AC (mouse)	P17012 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	20 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFX.H12INVIVO.0.P.B.pcm
PWM	ZFX.H12INVIVO.0.P.B.pwm
PFM	ZFX.H12INVIVO.0.P.B.pfm
Alignment	ZFX.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZFX.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZFX.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZFX.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZFX.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZFX.H12INVIVO.0.P.B_homer_format_0.001.txt ZFX.H12INVIVO.0.P.B_homer_format_0.0005.txt ZFX.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	28.0	199.0	182.0	29.0
02	91.0	176.0	14.0	157.0
03	433.0	0.0	4.0	1.0
04	1.0	0.0	432.0	5.0
05	3.0	3.0	431.0	1.0
06	1.0	432.0	4.0	1.0
07	5.0	419.0	11.0	3.0
08	12.0	147.0	167.0	112.0
09	69.0	259.0	83.0	27.0
10	111.0	31.0	268.0	28.0

PFM

	A	C	G	T
01	0.064	0.454	0.416	0.066
02	0.208	0.402	0.032	0.358
03	0.989	0.0	0.009	0.002
04	0.002	0.0	0.986	0.011
05	0.007	0.007	0.984	0.002
06	0.002	0.986	0.009	0.002
07	0.011	0.957	0.025	0.007
08	0.027	0.336	0.381	0.256
09	0.158	0.591	0.189	0.062
10	0.253	0.071	0.612	0.064

PWM

	A	C	G	T
01	-1.325	0.591	0.503	-1.291
02	-0.182	0.469	-1.968	0.356
03	1.365	-4.291	-3.001	-3.785
04	-3.785	-4.291	1.362	-2.835
05	-3.201	-3.201	1.36	-3.785
06	-3.785	1.362	-3.001	-3.785
07	-2.835	1.332	-2.182	-3.201
08	-2.106	0.291	0.417	0.022
09	-0.454	0.853	-0.273	-1.359
10	0.013	-1.228	0.887	-1.325

Standard thresholds

P-value	Threshold
0.001	4.26323
0.0005	5.35477
0.0001	7.66143