| Motif | ZFX.H12INVITRO.0.P.D |
| Gene (human) | ZFX (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zfx |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZFX.H12INVITRO.0.P.D |
| Gene (human) | ZFX (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Zfx |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | SYAGGCCbvR |
| GC content | 72.5% |
| Information content (bits; total / per base) | 11.676 / 1.168 |
| Data sources | ChIP-Seq |
| Aligned words | 999 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 20 (123) | 0.836 | 0.873 | 0.675 | 0.75 | 0.751 | 0.785 | 1.963 | 2.122 | 40.201 | 156.959 |
| Mouse | 1 (7) | 0.878 | 0.902 | 0.741 | 0.795 | 0.759 | 0.774 | 1.992 | 2.073 | 130.721 | 145.721 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 3.948 | 13.162 | 0.102 | 0.055 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | ZFX-ZFY {2.3.3.65} (TFClass) |
| TFClass ID | TFClass: 2.3.3.65.1 |
| HGNC | HGNC:12869 |
| MGI | MGI:99211 |
| EntrezGene (human) | GeneID:7543 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:22764 (SSTAR profile) |
| UniProt ID (human) | ZFX_HUMAN |
| UniProt ID (mouse) | ZFX_MOUSE |
| UniProt AC (human) | P17010 (TFClass) |
| UniProt AC (mouse) | P17012 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 20 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZFX.H12INVITRO.0.P.D.pcm |
| PWM | ZFX.H12INVITRO.0.P.D.pwm |
| PFM | ZFX.H12INVITRO.0.P.D.pfm |
| Alignment | ZFX.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | ZFX.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZFX.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | ZFX.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | ZFX.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 99.0 | 537.0 | 320.0 | 43.0 |
| 02 | 113.0 | 514.0 | 34.0 | 338.0 |
| 03 | 994.0 | 2.0 | 3.0 | 0.0 |
| 04 | 3.0 | 0.0 | 996.0 | 0.0 |
| 05 | 0.0 | 1.0 | 998.0 | 0.0 |
| 06 | 2.0 | 989.0 | 6.0 | 2.0 |
| 07 | 3.0 | 989.0 | 0.0 | 7.0 |
| 08 | 57.0 | 281.0 | 305.0 | 356.0 |
| 09 | 214.0 | 534.0 | 175.0 | 76.0 |
| 10 | 375.0 | 46.0 | 513.0 | 65.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.099 | 0.538 | 0.32 | 0.043 |
| 02 | 0.113 | 0.515 | 0.034 | 0.338 |
| 03 | 0.995 | 0.002 | 0.003 | 0.0 |
| 04 | 0.003 | 0.0 | 0.997 | 0.0 |
| 05 | 0.0 | 0.001 | 0.999 | 0.0 |
| 06 | 0.002 | 0.99 | 0.006 | 0.002 |
| 07 | 0.003 | 0.99 | 0.0 | 0.007 |
| 08 | 0.057 | 0.281 | 0.305 | 0.356 |
| 09 | 0.214 | 0.535 | 0.175 | 0.076 |
| 10 | 0.375 | 0.046 | 0.514 | 0.065 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.915 | 0.762 | 0.246 | -1.727 |
| 02 | -0.785 | 0.718 | -1.951 | 0.301 |
| 03 | 1.376 | -4.212 | -3.974 | -4.981 |
| 04 | -3.974 | -4.981 | 1.378 | -4.981 |
| 05 | -4.981 | -4.524 | 1.38 | -4.981 |
| 06 | -4.212 | 1.371 | -3.483 | -4.212 |
| 07 | -3.974 | 1.371 | -4.981 | -3.361 |
| 08 | -1.454 | 0.117 | 0.199 | 0.352 |
| 09 | -0.153 | 0.756 | -0.353 | -1.174 |
| 10 | 0.404 | -1.662 | 0.716 | -1.327 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.625235 |
| 0.0005 | 5.126705 |
| 0.0001 | 7.754825 |