ZFX.H12CORE.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFX.H12CORE.0.P.B
Gene (human)	ZFX (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfx
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	10
Consensus	SYAGGCCbvR
GC content	72.5%
Information content (bits; total / per base)	11.676 / 1.168
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	20 (123)	0.836	0.873	0.675	0.75	0.751	0.785	1.963	2.122	40.201	156.959
Mouse	1 (7)	0.878	0.902	0.741	0.795	0.759	0.774	1.992	2.073	130.721	145.721

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.948	13.162	0.102	0.055

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZFX-ZFY {2.3.3.65} (TFClass)
TFClass ID	TFClass: 2.3.3.65.1
HGNC	HGNC:12869
MGI	MGI:99211
EntrezGene (human)	GeneID:7543 (SSTAR profile)
EntrezGene (mouse)	GeneID:22764 (SSTAR profile)
UniProt ID (human)	ZFX_HUMAN
UniProt ID (mouse)	ZFX_MOUSE
UniProt AC (human)	P17010 (TFClass)
UniProt AC (mouse)	P17012 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	20 human, 1 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFX.H12CORE.0.P.B.pcm
PWM	ZFX.H12CORE.0.P.B.pwm
PFM	ZFX.H12CORE.0.P.B.pfm
Alignment	ZFX.H12CORE.0.P.B.words.tsv
Threshold to P-value map	ZFX.H12CORE.0.P.B.thr
Motif in other formats
JASPAR format	ZFX.H12CORE.0.P.B_jaspar_format.txt
MEME format	ZFX.H12CORE.0.P.B_meme_format.meme
Transfac format	ZFX.H12CORE.0.P.B_transfac_format.txt
Homer format	ZFX.H12CORE.0.P.B_homer_format_0.001.txt ZFX.H12CORE.0.P.B_homer_format_0.0005.txt ZFX.H12CORE.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	99.0	537.0	320.0	43.0
02	113.0	514.0	34.0	338.0
03	994.0	2.0	3.0	0.0
04	3.0	0.0	996.0	0.0
05	0.0	1.0	998.0	0.0
06	2.0	989.0	6.0	2.0
07	3.0	989.0	0.0	7.0
08	57.0	281.0	305.0	356.0
09	214.0	534.0	175.0	76.0
10	375.0	46.0	513.0	65.0

PFM

	A	C	G	T
01	0.099	0.538	0.32	0.043
02	0.113	0.515	0.034	0.338
03	0.995	0.002	0.003	0.0
04	0.003	0.0	0.997	0.0
05	0.0	0.001	0.999	0.0
06	0.002	0.99	0.006	0.002
07	0.003	0.99	0.0	0.007
08	0.057	0.281	0.305	0.356
09	0.214	0.535	0.175	0.076
10	0.375	0.046	0.514	0.065

PWM

	A	C	G	T
01	-0.915	0.762	0.246	-1.727
02	-0.785	0.718	-1.951	0.301
03	1.376	-4.212	-3.974	-4.981
04	-3.974	-4.981	1.378	-4.981
05	-4.981	-4.524	1.38	-4.981
06	-4.212	1.371	-3.483	-4.212
07	-3.974	1.371	-4.981	-3.361
08	-1.454	0.117	0.199	0.352
09	-0.153	0.756	-0.353	-1.174
10	0.404	-1.662	0.716	-1.327

Standard thresholds

P-value	Threshold
0.001	3.625235
0.0005	5.126705
0.0001	7.754825