ZFP90.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP90.H12INVITRO.1.P.D
Gene (human)	ZFP90 (GeneCards)
Gene synonyms (human)	KIAA1954, ZNF756
Gene (mouse)	Zfp90
Gene synonyms (mouse)	Nk10
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	YCCTCTdARYACTGCYTTWGCTG
GC content	49.31%
Information content (bits; total / per base)	27.538 / 1.197
Data sources	ChIP-Seq
Aligned words	779

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.894	0.896	0.899	0.899	0.885	0.888	12.863	13.46	218.431	302.119

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.149
HGNC	HGNC:23329
MGI	MGI:104786
EntrezGene (human)	GeneID:146198 (SSTAR profile)
EntrezGene (mouse)	GeneID:22751 (SSTAR profile)
UniProt ID (human)	ZFP90_HUMAN
UniProt ID (mouse)	ZFP90_MOUSE
UniProt AC (human)	Q8TF47 (TFClass)
UniProt AC (mouse)	Q61967 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP90.H12INVITRO.1.P.D.pcm
PWM	ZFP90.H12INVITRO.1.P.D.pwm
PFM	ZFP90.H12INVITRO.1.P.D.pfm
Alignment	ZFP90.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZFP90.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZFP90.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZFP90.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZFP90.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZFP90.H12INVITRO.1.P.D_homer_format_0.001.txt ZFP90.H12INVITRO.1.P.D_homer_format_0.0005.txt ZFP90.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	27.0	417.0	65.0	270.0
02	13.0	734.0	7.0	25.0
03	6.0	741.0	1.0	31.0
04	18.0	51.0	4.0	706.0
05	11.0	684.0	26.0	58.0
06	50.0	52.0	11.0	666.0
07	299.0	53.0	113.0	314.0
08	648.0	33.0	60.0	38.0
09	344.0	43.0	360.0	32.0
10	35.0	491.0	34.0	219.0
11	642.0	25.0	90.0	22.0
12	8.0	703.0	10.0	58.0
13	74.0	37.0	22.0	646.0
14	38.0	14.0	716.0	11.0
15	11.0	749.0	6.0	13.0
16	42.0	132.0	9.0	596.0
17	13.0	13.0	10.0	743.0
18	6.0	13.0	7.0	753.0
19	475.0	19.0	138.0	147.0
20	60.0	40.0	659.0	20.0
21	25.0	705.0	14.0	35.0
22	14.0	21.0	7.0	737.0
23	56.0	14.0	682.0	27.0

PFM

	A	C	G	T
01	0.035	0.535	0.083	0.347
02	0.017	0.942	0.009	0.032
03	0.008	0.951	0.001	0.04
04	0.023	0.065	0.005	0.906
05	0.014	0.878	0.033	0.074
06	0.064	0.067	0.014	0.855
07	0.384	0.068	0.145	0.403
08	0.832	0.042	0.077	0.049
09	0.442	0.055	0.462	0.041
10	0.045	0.63	0.044	0.281
11	0.824	0.032	0.116	0.028
12	0.01	0.902	0.013	0.074
13	0.095	0.047	0.028	0.829
14	0.049	0.018	0.919	0.014
15	0.014	0.961	0.008	0.017
16	0.054	0.169	0.012	0.765
17	0.017	0.017	0.013	0.954
18	0.008	0.017	0.009	0.967
19	0.61	0.024	0.177	0.189
20	0.077	0.051	0.846	0.026
21	0.032	0.905	0.018	0.045
22	0.018	0.027	0.009	0.946
23	0.072	0.018	0.875	0.035

PWM

	A	C	G	T
01	-1.925	0.757	-1.081	0.324
02	-2.595	1.321	-3.121	-1.997
03	-3.244	1.33	-4.3	-1.794
04	-2.301	-1.316	-3.546	1.282
05	-2.741	1.25	-1.96	-1.191
06	-1.335	-1.297	-2.741	1.224
07	0.426	-1.279	-0.538	0.474
08	1.196	-1.735	-1.159	-1.6
09	0.565	-1.481	0.61	-1.764
10	-1.678	0.92	-1.706	0.116
11	1.187	-1.997	-0.762	-2.116
12	-3.012	1.277	-2.824	-1.191
13	-0.954	-1.625	-2.116	1.193
14	-1.6	-2.529	1.296	-2.741
15	-2.741	1.341	-3.244	-2.595
16	-1.504	-0.385	-2.913	1.113
17	-2.595	-2.595	-2.824	1.333
18	-3.244	-2.595	-3.121	1.346
19	0.887	-2.252	-0.341	-0.279
20	-1.159	-1.551	1.213	-2.205
21	-1.997	1.28	-2.529	-1.678
22	-2.529	-2.159	-3.121	1.325
23	-1.226	-2.529	1.247	-1.925

Standard thresholds

P-value	Threshold
0.001	-2.77994
0.0005	-1.24289
0.0001	2.05951