ZFP82.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP82.H12RSNP.0.P.D
Gene (human)	ZFP82 (GeneCards)
Gene synonyms (human)	KIAA1948, ZNF545
Gene (mouse)	Zfp82
Gene synonyms (mouse)	Kiaa1948, Znf545
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	hTTChAdYYbMYdRWdWYTYYMTTY
GC content	37.81%
Information content (bits; total / per base)	18.132 / 0.725
Data sources	ChIP-Seq
Aligned words	872

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.765	0.807	0.71	0.767	0.852	0.858	7.163	7.713	152.824	172.523

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZFP30-like {2.3.3.63} (TFClass)
TFClass ID	TFClass: 2.3.3.63.2
HGNC	HGNC:28682
MGI	MGI:1890753
EntrezGene (human)	GeneID:284406 (SSTAR profile)
EntrezGene (mouse)	GeneID:330502 (SSTAR profile)
UniProt ID (human)	ZFP82_HUMAN
UniProt ID (mouse)	ZFP82_MOUSE
UniProt AC (human)	Q8N141 (TFClass)
UniProt AC (mouse)	Q6P9Y7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP82.H12RSNP.0.P.D.pcm
PWM	ZFP82.H12RSNP.0.P.D.pwm
PFM	ZFP82.H12RSNP.0.P.D.pfm
Alignment	ZFP82.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZFP82.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZFP82.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZFP82.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZFP82.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZFP82.H12RSNP.0.P.D_homer_format_0.001.txt ZFP82.H12RSNP.0.P.D_homer_format_0.0005.txt ZFP82.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	214.0	423.0	25.0	210.0
02	37.0	85.0	44.0	706.0
03	8.0	48.0	19.0	797.0
04	11.0	683.0	3.0	175.0
05	103.0	651.0	15.0	103.0
06	716.0	60.0	30.0	66.0
07	167.0	55.0	332.0	318.0
08	52.0	130.0	68.0	622.0
09	25.0	193.0	46.0	608.0
10	40.0	475.0	191.0	166.0
11	645.0	92.0	50.0	85.0
12	67.0	452.0	63.0	290.0
13	105.0	96.0	200.0	471.0
14	568.0	84.0	168.0	52.0
15	535.0	80.0	42.0	215.0
16	120.0	58.0	199.0	495.0
17	177.0	96.0	26.0	573.0
18	24.0	489.0	37.0	322.0
19	19.0	148.0	18.0	687.0
20	88.0	559.0	25.0	200.0
21	69.0	270.0	21.0	512.0
22	156.0	536.0	38.0	142.0
23	15.0	94.0	12.0	751.0
24	22.0	119.0	37.0	694.0
25	29.0	530.0	27.0	286.0

PFM

	A	C	G	T
01	0.245	0.485	0.029	0.241
02	0.042	0.097	0.05	0.81
03	0.009	0.055	0.022	0.914
04	0.013	0.783	0.003	0.201
05	0.118	0.747	0.017	0.118
06	0.821	0.069	0.034	0.076
07	0.192	0.063	0.381	0.365
08	0.06	0.149	0.078	0.713
09	0.029	0.221	0.053	0.697
10	0.046	0.545	0.219	0.19
11	0.74	0.106	0.057	0.097
12	0.077	0.518	0.072	0.333
13	0.12	0.11	0.229	0.54
14	0.651	0.096	0.193	0.06
15	0.614	0.092	0.048	0.247
16	0.138	0.067	0.228	0.568
17	0.203	0.11	0.03	0.657
18	0.028	0.561	0.042	0.369
19	0.022	0.17	0.021	0.788
20	0.101	0.641	0.029	0.229
21	0.079	0.31	0.024	0.587
22	0.179	0.615	0.044	0.163
23	0.017	0.108	0.014	0.861
24	0.025	0.136	0.042	0.796
25	0.033	0.608	0.031	0.328

PWM

	A	C	G	T
01	-0.018	0.659	-2.108	-0.037
02	-1.737	-0.93	-1.57	1.17
03	-3.121	-1.486	-2.362	1.291
04	-2.851	1.137	-3.846	-0.218
05	-0.741	1.089	-2.577	-0.741
06	1.184	-1.27	-1.936	-1.177
07	-0.264	-1.355	0.418	0.375
08	-1.409	-0.512	-1.148	1.043
09	-2.108	-0.121	-1.527	1.021
10	-1.662	0.775	-0.131	-0.27
11	1.08	-0.852	-1.447	-0.93
12	-1.163	0.725	-1.223	0.283
13	-0.722	-0.81	-0.085	0.766
14	0.953	-0.941	-0.258	-1.409
15	0.893	-0.989	-1.615	-0.014
16	-0.591	-1.303	-0.09	0.816
17	-0.207	-0.81	-2.071	0.962
18	-2.146	0.804	-1.737	0.388
19	-2.362	-0.384	-2.412	1.143
20	-0.896	0.937	-2.108	-0.085
21	-1.134	0.212	-2.27	0.849
22	-0.332	0.895	-1.711	-0.425
23	-2.577	-0.831	-2.775	1.231
24	-2.227	-0.599	-1.737	1.153
25	-1.968	0.884	-2.036	0.27

Standard thresholds

P-value	Threshold
0.001	2.35416
0.0005	3.49371
0.0001	5.91891